Protein Info for DZA65_RS02090 in Dickeya dianthicola ME23

Annotation: TIGR04141 family sporadically distributed protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 transmembrane" amino acids 83 to 104 (22 residues), see Phobius details amino acids 509 to 526 (18 residues), see Phobius details TIGR04141: sporadically distributed protein, TIGR04141 family" amino acids 11 to 519 (509 residues), 526.6 bits, see alignment E=2.9e-162 PF19614: DUF6119" amino acids 11 to 520 (510 residues), 423.3 bits, see alignment E=7.2e-131

Best Hits

KEGG orthology group: None (inferred from 68% identity to mmw:Mmwyl1_2748)

Predicted SEED Role

"FIG00508541: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DEY3 at UniProt or InterPro

Protein Sequence (542 amino acids)

>DZA65_RS02090 TIGR04141 family sporadically distributed protein (Dickeya dianthicola ME23)
MKKTQPRKEKLSIYLVRNANKKDDEFIKIDKAKNGIEIKLDGVDYAFLYAKNSFKNTPSW
TKLFTHYEHIDADYFGMSSNVGAVFVVRAFGYAFILSFGSGFHLIKDEEIERDFGLRVTL
NSVDPDKLRSLDKASYDHNPLNSRTQSTKDVDIFNLHLDSESELLYAVTGTSLVKEFGSQ
VTGRDALTLAVDITLEQLSGILHEAISRYKKKLPDKFSWVENINRVRYQDEIDILDLELD
DYFSSGRYTNFWLGEPEIVDWEGQVGYSFDMYPRTPRHIILTLDDYIEYLNGEPISVFRL
KGDVIHINNSDFISTKSWSVYRCLYAEIIFGDVYYILRNGMWYKINQDFVNSVDEYLVDL
SDYDFDFPIYDHEREDIYNDYLCKNYSNFSLMDKKNIAIGGVYDKLEHCDLIRNGCDFIH
VKYYRSSGTLSHLFFQGMVAAEAFIKDKDYRKKLNPKLPESIRLDDVNSRPNPNKYKVVY
AIATVKNLPQELPFFSKVTLKNTLKTLKALGYIVSIARIDISPIILKIKKCKPKKYHLNN
FN