Protein Info for DZA65_RS02030 in Dickeya dianthicola ME23

Annotation: YfcC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 146 to 170 (25 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 262 to 279 (18 residues), see Phobius details amino acids 285 to 304 (20 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details amino acids 385 to 403 (19 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details amino acids 443 to 464 (22 residues), see Phobius details PF03606: DcuC" amino acids 6 to 462 (457 residues), 402.4 bits, see alignment E=1.1e-124

Best Hits

KEGG orthology group: None (inferred from 96% identity to ddc:Dd586_0385)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CX48 at UniProt or InterPro

Protein Sequence (467 amino acids)

>DZA65_RS02030 YfcC family protein (Dickeya dianthicola ME23)
MKTFKFPSAYTILFLLIACMAALSWIIPAGQYQMVMNDKLGKPVPLAGTWHPVATKPQGI
TDVLLAPVDGLYNHRTNEAGAIDVALFILIVGGFLGIVTKTGAIDAGIERVTTRLTGREE
WMIPILMALFAAGGTIYGMAEESLPFYSLMVPIMLAAGFDSIVAAATILLGAGIGTLGST
INPFATVIAANAAGITFTAGIGLRIVILIIGWLICVAYVMRYARKVKRDPSASLVADQWE
ADRAHFLANKGHAMQPFTITRKIVLIIFALAFAIMIYGVSVRGWWMGEISGVFLASSIII
GLIARMSEAELTSTFIDGARDLLGVALIIGIARGIVVIMDNGMITHTILNQAEIAMSGLS
SVLFINVMFALEILLSFLVPSSSGLAVLTMPIMAPLADFAHVARELVVTAYQSASGVVNL
ITPTSAVVMGGLAISHVPYVRWLRWVSPLLVTLTLLLMVGLSLGTHG