Protein Info for DZA65_RS01675 in Dickeya dianthicola ME23

Annotation: YraN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 TIGR00252: TIGR00252 family protein" amino acids 17 to 127 (111 residues), 131.3 bits, see alignment E=9.1e-43 PF02021: UPF0102" amino acids 23 to 115 (93 residues), 87.9 bits, see alignment E=2.4e-29

Best Hits

Swiss-Prot: 69% identical to Y307_PECCP: UPF0102 protein PC1_0307 (PC1_0307) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K07460, putative endonuclease (inferred from 93% identity to ddc:Dd586_0317)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>DZA65_RS01675 YraN family protein (Dickeya dianthicola ME23)
MAAVPSGTTGARLLNRRITGGRYEQLARRHLERAGLVFVDANVTVRGGELDLIMRDGNSW
VFVEVRYRRNSDFGGAAASITRQKQRSLLHAASVWLARQGTSLDATDCRFDVLAVTGSQV
EWLPNAFGQPD