Protein Info for DZA65_RS01640 in Dickeya dianthicola ME23

Annotation: TIGR01212 family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 TIGR01212: radical SAM protein, TIGR01212 family" amino acids 7 to 300 (294 residues), 435.1 bits, see alignment E=5.9e-135 PF04055: Radical_SAM" amino acids 44 to 201 (158 residues), 75.6 bits, see alignment E=5.4e-25 PF16199: Radical_SAM_C" amino acids 209 to 291 (83 residues), 70.4 bits, see alignment E=1.1e-23

Best Hits

Swiss-Prot: 78% identical to YHCC_ECO57: Uncharacterized protein YhcC (yhcC) from Escherichia coli O157:H7

KEGG orthology group: K07139, (no description) (inferred from 96% identity to ddd:Dda3937_00711)

Predicted SEED Role

"COG1242: Predicted Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XX20 at UniProt or InterPro

Protein Sequence (309 amino acids)

>DZA65_RS01640 TIGR01212 family radical SAM protein (Dickeya dianthicola ME23)
MQLQKLINMFGGDLQRRYGEKIHKLTLHGGFSCPNRDGTLGRSGCTFCNVASFADEQMQQ
RSIAEQLAAQAGKINRASRYLAYFQAYTSTYAEVQVLASMYRQALTQADMVGLCVGTRPD
CVPDTVLDLLADYHDRGYEVWLELGLQSAHDRTLRRINRGHDFACYRQTAQRARARGLKV
CSHLIVGLPGESDEHCLSTLQQVVEAGADGIKLHPLHIVTGSIMAKAWGAGRLPELSLAR
YVSVAGEMIRHTPPGIVYHRISASARRPTLLAPLWCENRWTGMVGVHDYLQQHGAQGSAL
GQPFHYSTN