Protein Info for DZA65_RS01475 in Dickeya dianthicola ME23

Annotation: ribosome-associated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 PF04751: DarP" amino acids 26 to 176 (151 residues), 193.1 bits, see alignment E=1.3e-61

Best Hits

Swiss-Prot: 86% identical to Y266_PECCP: UPF0307 protein PC1_0266 (PC1_0266) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K09889, ribosome-associated protein (inferred from 97% identity to ddd:Dda3937_00675)

Predicted SEED Role

"FIG138315: Putative alpha helix protein" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D6V6 at UniProt or InterPro

Protein Sequence (182 amino acids)

>DZA65_RS01475 ribosome-associated protein (Dickeya dianthicola ME23)
MNKHPEDWQDDVPDASQDDEDEEIIWVSKSEIKRDAEALKALGAELVELGKNALERIPLD
EDLRAAIELAQRITKEGRRRQLQLIGKMLRARDPEPIQTALDKLRNRHNQQVSLFHKLEQ
LRDRLVNEGDGAVPDILALYPQADRQQLRSLVRNAQKEKAANKPSKSARLIFQYLRELAE
VE