Protein Info for DZA65_RS01435 in Dickeya dianthicola ME23

Annotation: AsmA2 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1278 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 1216 to 1238 (23 residues), see Phobius details PF13116: YhdP" amino acids 1 to 1260 (1260 residues), 1284.2 bits, see alignment E=0 TIGR02099: TIGR02099 family protein" amino acids 2 to 1268 (1267 residues), 1353.6 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 95% identity to ddd:Dda3937_00667)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XSA3 at UniProt or InterPro

Protein Sequence (1278 amino acids)

>DZA65_RS01435 AsmA2 domain-containing protein (Dickeya dianthicola ME23)
MKRLPAIAAATGAVLIVLAALLVSGLRMVLPTLDTFRPQVVAWAQSVTGLPMEVESLSGS
WETFGPTLDITNLRIHHPGAEWQSERISVALDVWQSLLHLKWKFRDLTFYHLQVDIKTPI
DPERQRAGTWEPDQLGSLFLRQFDHFDLRNSRIRFLTPAGTQAELQIPQLTWLNGKNRHR
AEGQISLSSFNGPHGMVQLRMDLRDEQGWLNNGVVYLQADNIDMKPWLGRWIRNNTGLES
ANFSLAAWLQVREGDIYGGDLLLSQGDASWRDGDTLHRLGINGMTLHASRYQNGWQLDVP
ALNLSTDGVGWPKGQLSALWLPADTQLLGPDRSAELRIRGRHLALERLGPLLPLLNTTTP
ELKTRWQALQPEGQLTTLALDIPLQQPEQTRFQASWQDVGWKNWQRLPGANHVSGEATGS
LARGRTRVNLAQSTLPYQDMFRAPLDIRQADATLDWRSDAQGWELWGQGLDVRSRSLWAN
GDFRYRHPAQGEPRLDILAGIRLADAADAWRYYPEPFMGKDLVNYLTGAIKSGQVDNATL
VFAGNPAQFPFEHQEGQFQVWVPLEKSRFEFQPGWPALDNLNITLNFLNNGLWMAAPQVM
LGDAEGRNINAVIPDYSKEKLLIDGDISGSGEEVSGYFAQTPLKSSLGSALTQIQIGGEV
QGNLHLDIPLNGGLVKASGDVALNNNHLFIKPLDVSLQSVSGQFHYDNGNLASQTLQARW
LEQPLTFTFSTQEQDKAFLVNVGLQGNWAASRLPGLPKPVAAALNGNAGWQSAVQVTLPR
QGPSSYNVTFQGDLKEVSSHLPSPLNKAGGTALGLQANAKGDVRGFSLTGSLGKNQSFNS
QWLLKDNNVMLTRAAWQEGAKPPPLPDDSSLTLALPPLDGERWLALLPGVRNAVSAQAGA
SRFQWPERVTLTTPELKILGQQWHDLMFTSRSQSGGSEITATGREIDGRLLIPASGLWRS
DVRYLYYNPQWHGDDATNPAALAEKKSPLNDPSIRFEDWPALQFNCRECWLMGQNVGQVK
GTLQPEPNKLVLANGLVDNGKATLTLDGSWQENGEGTRTAIKGQLSGGSLSDNADWLGLA
TPLRAGAFKIDYDLYWRGSPWAPHIPSLSGILKTDIGKGEIVNVGTGQAGQLLRLVSFDA
LLRKLQFDFSDTFGKGFYFDSVRSTAWIKDGVLHTDNLLVDGLEADIAMKGDIDLVKREL
SMEAVVAPEISATVGVATAFAVNPVIGAAVFAASKVLAPLWSKISLIRYHISGSVDQPKI
QEVVREPQKAEAAEAAGQ