Protein Info for DZA65_RS00655 in Dickeya dianthicola ME23

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 51% identical to LOLD_RALSO: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K02003, (no description) (inferred from 89% identity to dze:Dd1591_3983)

MetaCyc: 46% identical to L-glutamine ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-12-RXN [EC: 7.4.2.1]

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XV89 at UniProt or InterPro

Protein Sequence (233 amino acids)

>DZA65_RS00655 ABC transporter ATP-binding protein (Dickeya dianthicola ME23)
MPETCETDLICLQRITHVYATAAATQPVLHDVSLSVPKGQSCAIVGASGSGKSTLLSIIG
LLDQPTSGRLLLAGSDMTQANADERAVMRNQAIGFVFQNFNLLPRLDALDNVALPLCYRG
IPRQSARQMARRQLVRVGLAERLHHRPADLSGGQRQRVAIARALVGDPALLLADEPTGNL
DSQTAHEIIDLLLTLNREQAVTLVIVTHDAGIARRMQRCVQVQDGRVGETPCA