Protein Info for DZA65_RS00610 in Dickeya dianthicola ME23

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 PF00005: ABC_tran" amino acids 18 to 163 (146 residues), 113.3 bits, see alignment E=1.4e-36 PF13304: AAA_21" amino acids 132 to 198 (67 residues), 28.5 bits, see alignment E=1.6e-10

Best Hits

Swiss-Prot: 42% identical to OPPF_STRPQ: Oligopeptide transport ATP-binding protein OppF (oppF) from Streptococcus pyogenes serotype M3 (strain SSI-1)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 97% identity to dze:Dd1591_3989)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C3M2 at UniProt or InterPro

Protein Sequence (246 amino acids)

>DZA65_RS00610 ABC transporter ATP-binding protein (Dickeya dianthicola ME23)
MINVENLRIAFGGVEVVKGVSFVLESGDSFGMVGESGSGKSTILRALAGLNTQWQGRIEF
GGMAQSARRDRSFFRQVQMVFQDPYGSLHPRQTIDRILHEPLLVHRFDRAEQRITQALAE
VGLPAAARFRFPHQLSGGQRQRVAIARALIAEPEVLLLDEPTSALDVSVQAEILNLLTDL
RQARRLTYIMVSHNLAVVSHLCRRVGVMQHGEMVEQLSVEHLRARNLHHPHTAELYDLSM
TLEEPA