Protein Info for DZA65_RS00380 in Dickeya dianthicola ME23

Annotation: amino acid adenylation domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1488 PF00501: AMP-binding" amino acids 229 to 585 (357 residues), 286.3 bits, see alignment E=6.7e-89 TIGR01733: amino acid adenylation domain" amino acids 249 to 661 (413 residues), 417.3 bits, see alignment E=3.1e-129 PF00550: PP-binding" amino acids 1145 to 1208 (64 residues), 53.6 bits, see alignment (E = 4.4e-18) PF00975: Thioesterase" amino acids 1230 to 1332 (103 residues), 72.9 bits, see alignment 9.8e-24

Best Hits

KEGG orthology group: None (inferred from 91% identity to ddd:Dda3937_00972)

Predicted SEED Role

"Peptide synthetase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CIK4 at UniProt or InterPro

Protein Sequence (1488 amino acids)

>DZA65_RS00380 amino acid adenylation domain-containing protein (Dickeya dianthicola ME23)
MDNISHHVFNNPVLVLNKGLLPDHDDVSLARYLFSALTLAVSRISQNEEMIVGFHLHPQE
ITCWGHDDRIRENIIPLNIQLSSDTPIAGFIQNMMAWMTADAIQQENNAGARVLRLGAQH
TRQDIFDLELTWQPPVDNAPVRALVCHVVSREGTFMLTLRFNPARFSAAQVRKLPAVWRQ
ITAFAEKNGAETLRDIRLIDDAERQCVLHTFNQTDQAWDGEANLADRLKNRAQRHPEQTA
VVFRDRSLSYRQLYQQAGALAHYLNAQSTERERCVGLFVEPSLALMTGAWGILLSGNAYL
PLSPEYPQDRLAYMLENSQTRIIVTQPHLRERLLALSPPGIQVVTPDDVEAFMRQHAHRL
PDAPANDIASHHLAYVIYTSGSTGKPKGVMIEHHSVLNQMNWLAQTFGLNEDTVIVQKTP
MSFDAAQWEILSPACGCRVVMGEPGVYRNPEQLVDMLAEYRVTTLQCVPTLLQALLDTER
LTSCPALRQIFSGGEALQKHLAQACLETLPDCELINLYGPTECTINSSAFRVDPAGVQQG
PDTLSIGAPVANTRYYILDNCLTPVAVGQTGELYIGGDGVARGYLNRDDLTAERFIVDPF
APAGSGRRLYRTGDIASWNHDGTVQYAGRADNQVKLRGYRVELDEIRSAIETHEWVKAAA
VIVRNDPFTGYQNLISFIELNAREAALMDQGNHGSHHQSKADKAQVMMQLANKGCREFPA
AGQPYTLDLPGKQPDEKQRRTAFARKTYRFYDGGAVSRDDILSLLHEPLLTAISRQPGAL
TLDDLGHWLRYLGQFTSAERLLPKYSYASPGALYATQVFLELNGVAGLAAGHYYYQPVHH
QLVRVSEQTSVTPGSLRLHFVGKRSAIEPIYKNNIREVLQMEMGHIIGLLDNVLPGYGLG
VALCDAAALDPTPLTIDPDDDYLGACDVLCGPRLPADDDLDIYVQTAGANIANLPVGTYR
YVRGDLQHIADEVIDKKHVIAINQAVYERSSFGISIASRTEGWAGYVHVGRKLQRLQMNP
LNLGLMSSGYSSETGNDLPAARRFWQILGHRTGPYYFFIGGRISDEQKDSEGMKEDAVHM
KGPAEMIRDDLAAFMPDYMMPNKVLILDEMPLTANGKIDTKALANINVELKHKTIVAPRN
PLEHQVMAVWQAKLKREEVSVDDNFFESGGNSLIAVSLINELNATLNASLPLQVLFQAPT
VEKLAAWLSRARQEPVSRLVQLQPKGCQAPIYCWPGLGGYCMNLRLLARQLGAERPFFGI
QAHGINPGEAPYATIGEMAARDIELIRRHQPHGPYTLWGYSFGARVAFETAWQLELAGEV
VENLYLLAPGSPKLRDDRVAGMSRTADFDNPGYLTILFSVFIGSITDPALARCLETVRDE
ESFVAFITGLNPALDDGLVRRITRIVAQTFSFTYTFSELQQRQLNAPVTIVKAQGDDYSF
IENHGGFSTQPPTVLELMADHYSMLKAPGIDELTSVIQYQQSPSSLVG