Protein Info for DDA3937_RS17580 in Dickeya dadantii 3937

Annotation: MCP four helix bundle domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details PF02203: TarH" amino acids 3 to 174 (172 residues), 36.7 bits, see alignment E=8.4e-13 PF12729: 4HB_MCP_1" amino acids 6 to 176 (171 residues), 69.2 bits, see alignment E=6.9e-23 PF00672: HAMP" amino acids 213 to 263 (51 residues), 33.2 bits, see alignment 1.1e-11 PF00015: MCPsignal" amino acids 327 to 482 (156 residues), 164.4 bits, see alignment E=4.8e-52

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to ddd:Dda3937_03462)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SF98 at UniProt or InterPro

Protein Sequence (563 amino acids)

>DDA3937_RS17580 MCP four helix bundle domain-containing protein (Dickeya dadantii 3937)
MRLSDWRIGYRLGAGFAVLAVMLVVVGILSITRLSSFHDSARDIVQEIYPQTVDANTLID
NVNEGVRVFQQLLLVSGDDRIKAVSDQIPPISKEITRLMDALEKHANESNDARNQQLIGD
IRLIRAKFLESGQKVIALVKANNREEALNEFNQRLNPAQREYRNAVRQLVDYQDNAMMST
VDAMSATYHDIRLVLLAILGIGVVLSVWVAMAITRSVTQPIQQALVMADRVSQGDLTSQI
SSNRKDEAGLLLQALDHMNASLRQIVGQVRDGAEAISTAASQIAAGNQDLSSRTEEQASS
LEQTAASMEELVSTIKNTAENTQQATSIANQASSAAHRSGEVMLSVTTKMRGIREASMRM
AEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKELI
DDSVDKIQEGMQLVDTAESTMDGLTGHVKDVHSIINEISQASHEQSDGISQINIAVGQID
TTTQQNAALVEESASAALSLQSQASLLAEAVSAFRLTPQGGNGAPSPVRQPTALSHALPS
ARPNVTEKRAATTAGTNDDWTSF