Protein Info for DDA3937_RS11985 in Dickeya dadantii 3937

Annotation: MCE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 876 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details PF02470: MlaD" amino acids 46 to 137 (92 residues), 61.6 bits, see alignment E=3.5e-21 amino acids 163 to 227 (65 residues), 33 bits, see alignment 2.9e-12 amino acids 279 to 369 (91 residues), 30.6 bits, see alignment E=1.6e-11 amino acids 393 to 453 (61 residues), 27.2 bits, see alignment 1.9e-10 amino acids 514 to 589 (76 residues), 27.7 bits, see alignment E=1.4e-10 amino acids 633 to 722 (90 residues), 43.3 bits, see alignment E=1.8e-15 amino acids 745 to 806 (62 residues), 43.5 bits, see alignment 1.6e-15

Best Hits

Swiss-Prot: 66% identical to YEBT_ECOLI: Intermembrane transport protein YebT (yebT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_04338)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SF10 at UniProt or InterPro

Protein Sequence (876 amino acids)

>DDA3937_RS11985 MCE family protein (Dickeya dadantii 3937)
MHNQTPMTPTEANVKTRRRLSPFWLLPFIAMLLAGWLLYTNQQERGATVTIDFVSADGIV
PGRTPVRYQGVEIGTVRNIKLSDDLRTIQVIASIRNDMKEALRSGTQFWLVTPKASLAGV
SGLDALVGGNYIGMLPGGGDPASHFTAQDTQPKYRVNSGELLIHLRADDLGSLNAGSLVY
FRKMPVGKVYDYSVNPDHGGVTIDVLIDRRFTGLVKKDSRFWNVSGLKADVSLSGATVEM
QNLSALVNGAIAFDSPAQGEAAAADQNYTLYPDLAHSQRGVQITLDLPSGDKLRAGHTPL
LYQGLEVGTLQRIALEADQRVTGELIVDPSVVPLMRENTRIELAAPRLSLSDLNLPSLLG
GTTLTLIPGDGEPKQRFTVPDATQQQLQQPGALTVELTASQSYGIDSGQPVILHGVQIGR
IVQRALTDSGVSFIAVIDRQYRHLLHKDSQFIASSRVNVKMGLDGVQVLGASAQEWLSGG
VTVLPGRTGDAQPRYPLYSDREKAGAGIQGATPPTTLTLLTDSLPDIQEGSVVLYRKFQV
GEITRIRPKADAFEIDVYVRPEYRNLLTDNSVFWAEGGARVQLSGAGLTVQASPLSRALK
GAISFDNVDGAADVQGGKRPLYSNETAARAIGSRITLRTYDASKLSAGMPIRYLGIDIGQ
LESLKLAEQRDEVLVQAVLYPEYVRNFARAGTRFSVVTPEISAAGVNHLETLIQPYINVE
PGSGVFTRSFELQKATISDSRYQDGLNISVDTAEAGSLQVGTPVLFRGIEVGTVTGLSLG
ALSDRVSVAVRISKRHAHLVRDNSVFWLASGYNLQFGLTGGVIKSGTFQQFIRGGIAFAT
PPATPLAPAAQAGKHFLLHGEEPGGWRDWGTALPER