Protein Info for DDA3937_RS11095 in Dickeya dadantii 3937

Annotation: AvrE-family type 3 secretion system effector

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1625 PF11725: AvrE_T3Es" amino acids 95 to 1615 (1521 residues), 1994.4 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02945)

Predicted SEED Role

"Type III effector protein AvrE1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCN7 at UniProt or InterPro

Protein Sequence (1625 amino acids)

>DDA3937_RS11095 AvrE-family type 3 secretion system effector (Dickeya dadantii 3937)
MLGNINHIQRQQSVTDTQPAAAKATHALTQGSASVSGQSSSTSLQREGMQARMTSVSQQP
SLPKNEGAQIGRSPNLKDMQSAIDRALSPAPAKDQVSLDKKGQLTLGDGVPDHLKTLLSQ
TIGKNSLPFVAHQAAEDGSQHVLMDKSGRLFSLQQSGDSLVALHTSTPTQAAKAGEALSG
KNQASYTLGMDDTHVRASIVNRNGVNTINLPQPGQAAQAQLTGVHTDPAHGNEKLQIHDK
ALYSLNADQVWEKKSDTPHSQLAGQADGKLYAVKDDKTLTNLSAGHDSAPFADKIKSFSA
NAQGNVAVLTEKEDNTAQIHLLPKADAPAADRQTLDLKLDGQVALTRGSEQVNAKAVGLE
GNRLFVADDEGKVFAGKLPQDGGNAVKLEPYHSPALEAAFGENHKVQGFVAGEHGTMHAL
VNDAAGQKHLAPLADSRKPGETEGFKPGWNLSDALVVDNKAGLNAVRPQPHDVMDMGRLG
TMALHEGKVHYLDSTTQSWTKTDVGASQLKRGLDNQAYVLDEGQLKKLSINQKADSVTHG
DNNVFAVTQGRNSPSAGDPLTGLEKNSGTTALAVVDGNKFVTANDQGELQLHLNKPGLQR
AAVPPQPLPTAGLSGEVKDLALDKDQNLFALNKDGQLFKLDKQALQGNAEARANAQWQPV
TLPDNVKPEHLSTTKNHEPAISEDGHQQHQLTQSGWKSAVPDTQPNHPQPRAAETTYDRL
ADATKAVHIPLTNLTGKVEAQVLGSSGMESHKLNSNFGDFLGAYVKETAKEMVRKPIDAA
QHQIKGREGLSSVYDTQATMFKKLEQAVSSHTWSPKRDDLQSRMEKLDLGEAGKPLMAEL
KSFQNDLEMSAAKSATLLGKHQGVLKNSGEVNDNFKPSAFKSAVQSINDKRSGKDLSVAL
STVMNAAPLSKDSKAGELLNTFVDKKLDMSYQSDKVAAGPRRDLGDAMALTKSRLALDVM
TASDLHGIVDKLESLSGKQPTAADLKPIQAALGELRDQQYGGNDVKKVTDMGFTRFGALE
ADYDAVKTFTQAFGNDKSAVNLTARTTLEAGDKAALANKLKDNILSLDNGESLAVNRNYN
AGASTAYVPKQAKVLINATTFPIIPSGGLTGDRAYSLTFSRGDNGIDVNFGRNGGLNAKV
GVATGQSPNDTKKNFDFDDKKHTLGLDVRFGGSVNAGIGTVQQNGLKFTLSEKELPGFID
KLIDGNVNPLDLVTRGNDHRVKEGFSIKFDLDAALTADARAEVNLADKPSAEQKGKVPTS
AGRLSVGLGAGANLMSASHEHSTVRGEFTEQNATTNNRVRFMNQVNVGANATAFAGITKP
DPNGSWTAPLTSNASVTMTVDTKTNHSISMQLKAAQPVENRDMDSLLSSLEKKFTDPETQ
QVLKGVKDLTDTGEKLAILNKHFEAKTPADDGQYGAIKDLHTKTRQHETAEKQGVTLDSA
SYSTTYANLSKLDSNGIFHALRKLVSDNLPPTNAERIHGFMEENPALKAVVQKMQSLTNA
TAGVSLELKDEVKAKVEQGIQNNTMGKDDIAAIFRDSNNLRIKSLDFTQTVKNKEGLAFP
LPIVSAGSSADVSMTKLLGKINFSYGENQNSPSSFSLEGAIAKANPEVSQAVNHMHQQGI
TLAKQ