Protein Info for DDA3937_RS04920 in Dickeya dadantii 3937

Annotation: autotransporter serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1050 signal peptide" amino acids 1 to 62 (62 residues), see Phobius details PF00082: Peptidase_S8" amino acids 114 to 365 (252 residues), 97.4 bits, see alignment E=1.5e-31 TIGR02601: autotransporter-associated beta strand repeat" amino acids 522 to 553 (32 residues), 34.9 bits, see alignment (E = 5e-13) PF12951: PATR" amino acids 523 to 552 (30 residues), 35.9 bits, see alignment (E = 9.2e-13) PF03797: Autotransporter" amino acids 781 to 1030 (250 residues), 159.2 bits, see alignment E=2.6e-50

Best Hits

KEGG orthology group: K12685, subtilase-type serine protease [EC: 3.4.21.-] (inferred from 100% identity to ddd:Dda3937_03393)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.-

Use Curated BLAST to search for 3.4.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SBU3 at UniProt or InterPro

Protein Sequence (1050 amino acids)

>DDA3937_RS04920 autotransporter serine protease (Dickeya dadantii 3937)
MRMTFNTLGFSYARRPVVFHRIKTDFHHSGNAKDKKRFKKRLVTVLLLAQLAGTVLHPVL
AATAEDFRTREYMRNGAALDSIHAADAYALGYSGAGVTVGIINRVGDLSGNDEFNGKVDA
GSHWVSDPSSASPHGYWVAGVIGAERNGVGMQGVAYNSNLLTLGTDNSINDLFQGMVDMT
NRPDVKIISNSWNFLFYPDQLSSYSAAMQDLLLNTVVSAYTSAADVLASQGQLMVMSAGN
EGHLTPALFAALPTVLDNNGLQDNIANTWINVMAYDPSQPTSSAAFIATFSNLAQGATDY
SLLAPGVNVITTSSNNTFVRINGTSFASPYVAGVGALVSQAFPYMSGKQIADVLLSTATP
LTGSNLPKAVVLANEQYDENQSLTGTAVKVYATHTGITFTDDELTTLISSLKIKSPYDGM
TDDQVRAAILSAAADQNITVMSQNDYQALFGQGVVNAFKAVQGPGVLNAKRLVDSDLSSG
TFGGNFALYSIDTKGIDSTWSNDIGQVKNTASGSVLSGLDVGLRKQGAGTLYLTGNDTFA
GPTVVEGGKLIVGKVAGGTGSLAGDAWVQSGAVLGGHGVINGSVVVQNGGTLSPGNSVGT
LTVGNVRFDSGSIYEFEIDPQGNADQLVVANNAQLAGTVKLVGQTTGHLGDRFALVQVGG
TLTGAFDKLESVNNSLFLADALSYNPQSAFVSVVRNNVRFSDVAQTANQSAVANAIDNQS
GTAVLSAIADLQDADSARRAFDNLNGEFYATARNALIQNSRSIRDTLNSTMSGAGKGAEP
WVSSWGYDGRQDGDGAQAGMKYNGYGLLLGNGGHVGEQGALGFAVGAEKGRITMDDRASR
GDLSAYHAGVYLSGRALALDLRSGLSYSYITLDNQRDINVSGLNGQATGDYRANLAQGFV
EASHRFDFFNTLSVEPYGNTAWVWLQNQSGQESGNGAALAYDKDTTHTAFATGGLRLKVR
PLSRLPVSLYGDIGYQRRLIRDDNQVRLRFVSGGDAFTTEGLPLADNTRLMRAGVAVDFS
RNVHLSLGYQGDRATRVKDDSAQALFSMAF