Protein Info for DDA3937_RS02715 in Dickeya dadantii 3937

Annotation: anaerobic C4-dicarboxylate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 6 to 38 (33 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 131 to 157 (27 residues), see Phobius details amino acids 164 to 187 (24 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 261 to 279 (19 residues), see Phobius details amino acids 290 to 308 (19 residues), see Phobius details amino acids 329 to 346 (18 residues), see Phobius details amino acids 358 to 382 (25 residues), see Phobius details amino acids 408 to 431 (24 residues), see Phobius details PF03605: DcuA_DcuB" amino acids 5 to 365 (361 residues), 518.5 bits, see alignment E=4.6e-160 TIGR00770: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family" amino acids 5 to 433 (429 residues), 653 bits, see alignment E=1.2e-200

Best Hits

Swiss-Prot: 70% identical to DCUA_WOLSU: Anaerobic C4-dicarboxylate transporter DcuA (dcuA) from Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)

KEGG orthology group: K07791, anaerobic C4-dicarboxylate transporter DcuA (inferred from 100% identity to ddd:Dda3937_02717)

MetaCyc: 63% identical to C4-dicarboxylate transporter DcuA (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-106; TRANS-RXN-106A; TRANS-RXN-106B; TRANS-RXN-299; TRANS-RXN-379

Predicted SEED Role

"C4-dicarboxylate transporter DcuA"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SK29 at UniProt or InterPro

Protein Sequence (433 amino acids)

>DDA3937_RS02715 anaerobic C4-dicarboxylate transporter (Dickeya dadantii 3937)
MVILELFIVLLAIYLGARLGGIGIGFAGGLGVLVLTLGFHIKPGAIPFDVIEIIMAVIAA
IAAMQVAGGMDYLVSLAEKLLRRQPRYVTFLAPLVTYFMTLLAGTGHTAFSTLPVIAEVA
KEQGIRPSRPLSIAVVASQIAITASPISAAVVFVAGLLEPKGVSYLALLGICIPSTLIAI
LLTAVLTNFLGKELKDDEVYQERLRKGEVALRGHGQLMLKPGAKRSVGLFLVGIIAVVLY
ATAISDTVGLIQNPVLPRNEAIVVFMLTIATLICLTCQVDTSHILSASTFKSGMSACVCV
MGVAWLGDTFVKAHLADIQSTAGSLLQSHPWMLAVVLFFAATLLYSQAATAKALMPAALL
LGVSPVTAIASFAAVSALFVLPTYPTLLAAVEMDDTGSTRIGKYVFNHAFLIPGVVAISL
SVTFGFVIGHLVL