Protein Info for CCNA_01066 in Caulobacter crescentus NA1000 Δfur

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF00534: Glycos_transf_1" amino acids 174 to 327 (154 residues), 71.5 bits, see alignment E=9.5e-24 PF13692: Glyco_trans_1_4" amino acids 176 to 314 (139 residues), 53.4 bits, see alignment E=5.1e-18 PF13524: Glyco_trans_1_2" amino acids 185 to 345 (161 residues), 25 bits, see alignment E=2.4e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01066)

Predicted SEED Role

"glycosyl transferase, group 1 family protein LpsE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C6E6 at UniProt or InterPro

Protein Sequence (345 amino acids)

>CCNA_01066 glycosyltransferase (Caulobacter crescentus NA1000 Δfur)
MKVLVVNNAAPFQRGGAEELADHLVRRLNATPGVQSELVRVPFTWEPAERLIEEMLISKG
MRLYNVDRVIGLKFPAYLIPHHQKVLWLLHQFRQAYDLSEAGQSHLDFDDTGRAVKAAIR
AADNACFAECRKIYCNSPVTQNRLMKFNGVASQVLYPPLNDGELFTGGEHGDYVFAGGRV
AAGKRQHLLIEALALLPGSLRLVIAGPPENQAYADRLTKLVEDLDLKDRVELRFGFHPRE
DIARWANGALICAYLPFDEDSVGYVTMEAFAAGKAVLTVTDSGGLLEIVSADTGAVAEPT
PQALAEALDRLTSDKARAISLGDAARRLWRDKNVTWEETVRRLLD