Protein Info for CCNA_00105 in Caulobacter crescentus NA1000 Δfur

Annotation: MarC family integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details TIGR00427: membrane protein, MarC family" amino acids 5 to 211 (207 residues), 141.1 bits, see alignment E=2e-45 PF01914: MarC" amino acids 7 to 213 (207 residues), 148.1 bits, see alignment E=1.2e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0106)

Predicted SEED Role

"membrane protein, MarC family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C3S7 at UniProt or InterPro

Protein Sequence (232 amino acids)

>CCNA_00105 MarC family integral membrane protein (Caulobacter crescentus NA1000 Δfur)
MTEANLAVNFFVALFALIDPIGNVPLFAAATLGAAAAGRRMVAVYIGLFMAAFLIFFYFT
GVGLLEFFGISMPAFRIAGGIILFILGLDMVRDDFTTMFADAAEGIEDQSPRAYAKQRFE
RLIVPFAMPLLIGPGSISTVIIYAAEAKDFGAAGMGIGVAVIAAVSLVTVLTFWASPLVS
KVLGRIGMSIVVRVLGLILCALAVQFVLVGVADATRGLIKNDAKAPYAESHK