Protein Info for CA264_19940 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DNA uptake-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 signal peptide" amino acids 20 to 20 (1 residues), see Phobius details transmembrane" amino acids 21 to 42 (22 residues), see Phobius details PF12836: HHH_3" amino acids 85 to 144 (60 residues), 33.4 bits, see alignment E=4.3e-12 amino acids 184 to 242 (59 residues), 61.1 bits, see alignment E=9.6e-21 amino acids 254 to 312 (59 residues), 54.8 bits, see alignment E=8.5e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXN9 at UniProt or InterPro

Protein Sequence (314 amino acids)

>CA264_19940 DNA uptake-like protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKKLRHWIRRNFGFSQREVNAFLVLLTLLVLLTAAPFLFSWVYTSESGGFTSAQDRQLLD
SLVAQLEAKQPEPKAKYGVATVALRPFNPNQLTVEEWQAFGLPRYLAQRILNYRSKVGDL
TYKAELGKIYGLPDSVFQRLYPYIQLPEERPNKYKPGAYAGRQPTANPNWSSSRPAREKF
ILAPFNVNTADTTQLKQIRGIGSKLSSRIVKYRSGLGGFYSMAQLQEVYGLQPEVVDSLQ
KYTFVAKGYAPNQLHLNTATADELKAHPYISSNVARAIVAYREQHGTYGQVEDVRQVKLV
TAELYEKLQPYLAL