Protein Info for CA264_12525 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1051 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 43 to 1051 (1009 residues), 960.5 bits, see alignment E=1.4e-292 PF13620: CarboxypepD_reg" amino acids 43 to 113 (71 residues), 53.8 bits, see alignment 4.1e-18 PF13715: CarbopepD_reg_2" amino acids 44 to 125 (82 residues), 78.9 bits, see alignment 4.7e-26 PF07715: Plug" amino acids 134 to 243 (110 residues), 66.2 bits, see alignment E=7.1e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 219 to 249 (31 residues), 61.5 bits, see alignment (E = 5.1e-21) PF00593: TonB_dep_Rec" amino acids 500 to 1012 (513 residues), 55.2 bits, see alignment E=2.3e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YTP4 at UniProt or InterPro

Protein Sequence (1051 amino acids)

>CA264_12525 SusC/RagA family TonB-linked outer membrane protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MRKILHTALGCLTLTACLHTGAHAAGPGKWQPLLPLQTAQEVTVSGRVVDENGSGLPGVT
VVLKGTTKGTTTDATGNFSLPVPDGSGTLLFSFIGYTSQEVQINNRATVNVSLAPDTKAL
EEVVVVGYGEQKKSVVTGAISSVKASDLDNMPVTRVEQALQGRASGLTITSNSGQPGSPA
TVRVRGTTTIGKNPEDSDPLYVVDGVPIDGGIDYLNQSDIASIEVLKDAASAAIYGTRAA
NGVILVTTKRGTSGKMQVSYNGYYGVQEPWRKLDLLNAREYATLYNEASVAGGGAIKYPN
PQDLGEGTDWQEAVFSDNSPIQNHELSVSGGGEKSTFYTSFGYFNQEGIVAPSNSQYERF
TARFNSTHKVTKAITFGNNIGYTRISSVGVEPNSEWGAPLTRAINMDPLTPLIETDPEKA
NASPYDKAVVRDPQGRPYGISNNISSEIVNPVAALLVDQRRGWSDKVVGNAFVEIEPLAG
LRLRSSIGADLAFWGDHNFSPVFYLNTTNNNTQNDYTRNNNRGLNWLWEATAAYTRSFGR
HNATLLVGTSAQKNKGETQGGTKSGIPVSHLDDASLAFSVPTEDQFFWGGEYQNTLSSIF
GRVNYNYDERYLLTGIIRRDGSSKFGPNNKYGVFPSVSVGWVTSRESFFPANDIVNFLKI
RGSYGVVGNNRIDDFLYLARVGGGRNYTIGYGPDLELVNGVSPEALSNPDLQWEETSQLN
FGFEAVLFSDFTLTAEYYKKKTSDMLLQTTIPWYVGNNGPYGNIAEMENRGFEVELGYNK
TIGQVAFSLNGNASYLENEVTSLGPEKEFLNRQVFGPSGEVITRIEVGKPINFLYGLKND
GIFQNEEEIATYVNSEGEMLQPKAQPGDFRRVDVNGDGVINSDDRTMIGDPTPDWTYGFT
ASAKWKSFDLMVFGQGVAGNDVFQAIRRYDLQGANWTTEVFGRWAGEGTSNTFPRLSFND
ANKNFSSSSDFYVKDGSYFRIKVLQLGYSLPQNLISKVGLSRLRVYVTGNNLFTFTNYTG
YDPEIGGGSFGVDRGIYPQARAYMAGINIGF