Protein Info for CA264_03085 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: polysaccharide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 233 to 253 (21 residues), see Phobius details PF02563: Poly_export" amino acids 44 to 138 (95 residues), 64 bits, see alignment E=1.8e-21 PF22461: SLBB_2" amino acids 142 to 221 (80 residues), 32.5 bits, see alignment E=1.2e-11 PF10531: SLBB" amino acids 143 to 196 (54 residues), 28.7 bits, see alignment E=1.4e-10

Best Hits

KEGG orthology group: K01991, polysaccharide export outer membrane protein (inferred from 34% identity to pah:Poras_0789)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YNN5 at UniProt or InterPro

Protein Sequence (254 amino acids)

>CA264_03085 polysaccharide transporter (Pontibacter actiniarum KMM 6156, DSM 19842)
MRNITCFLLLILLASSCVSKKELVYLQNPNFKPYVPTEIQTRFSAYQLQSNDVLSIKVLS
VDPDMSNIFNIVNPNNAFGVSEPGSMYLSGYTIDNEGFINLPTVGKLKVEGLTTSQTQEL
IQTNLNRYIMDATVVVKLLSFKISVLGEVRNPGYFYIYNEKANLLEGLSLAGDLTQGANR
GSIKLIRQKEGKSEVVLLDLKDPNLVQSQYYYLMPNDVIYVEPLETELKRSNLVVVNAVL
GVISTGALLYNLFK