Protein Info for CA264_02090 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: peptidase M28

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF04389: Peptidase_M28" amino acids 210 to 410 (201 residues), 129.2 bits, see alignment E=2.6e-41 PF01546: Peptidase_M20" amino acids 226 to 316 (91 residues), 31.5 bits, see alignment E=2.5e-11

Best Hits

Predicted SEED Role

"putative peptidase, M28 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YN72 at UniProt or InterPro

Protein Sequence (432 amino acids)

>CA264_02090 peptidase M28 (Pontibacter actiniarum KMM 6156, DSM 19842)
MKFRHIALALACGFAATASAQDLSTITQEKTTQIVSALSADDMEGRASFTPGIDKAAKLI
QREFQRIGLQPLPGEDDLMQTFTMYRAAPREKEVKLDGKKVSPENVFAITDKKELEWKHK
GKQQVVKIGENDDFRTALRSLNNEQDVVVLVHPKHEDIFKRYQHYMGEGSVKQQLEEGGS
SKVFILTDQLNARKYNIEVENNIEQLQLTNVGGMIEGKRKNEFVVFSGHYDHIGIQKPID
GDSIANGADDDAAGTTAVMQLADYYKQQPQPERSLLFVAFAAEEIGGFGSKYFSEQLSPD
EIVAMFNIEMVGKPSKFGPNSAYLTGFERSDLGKLMQKRLEGTTYSIHPDPYPEQNLFYR
SDNATLARLGVPAHTISSVQIDQDKTYHTVNDELEQLDMAHLTNMIKAVALASQGVVNGE
DTPTRVDKSQVK