Protein Info for CA264_01960 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: competence protein ComEC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 32 to 51 (20 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 294 to 310 (17 residues), see Phobius details amino acids 316 to 333 (18 residues), see Phobius details amino acids 338 to 356 (19 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 393 to 416 (24 residues), see Phobius details amino acids 422 to 450 (29 residues), see Phobius details amino acids 456 to 474 (19 residues), see Phobius details amino acids 486 to 507 (22 residues), see Phobius details amino acids 514 to 531 (18 residues), see Phobius details PF13567: DUF4131" amino acids 32 to 194 (163 residues), 97.3 bits, see alignment E=8.5e-32 PF03772: Competence" amino acids 240 to 509 (270 residues), 212.9 bits, see alignment E=5.5e-67 TIGR00360: ComEC/Rec2-related protein" amino acids 261 to 438 (178 residues), 99.1 bits, see alignment E=1.7e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YN38 at UniProt or InterPro

Protein Sequence (703 amino acids)

>CA264_01960 competence protein ComEC (Pontibacter actiniarum KMM 6156, DSM 19842)
MLRWAPYPFVRITLSFVAGVLLYLVLGRQSGFSLGLLAFFFACFVAAFLLAKKYKAAFAW
DVAGILGLLTWFALGLAVAEQRTELHQPSHLTHLQAQPAYYTGVVADYVVQKPDYQSTVL
KVRQVQVNGQWREATGKVQLSVPHDSEQPFELNYGDVLLVKGAPQPVAPPLNPNQFDYSA
FLANKNIYHRHYLQPFQYQKVASEPPNPILYYSIQLRRRLDGVLRERVGEKREYAIASAL
LLGVKDELDNSIRQAYADTGTMHVLAVSGLHVGLIYTVLMLLLAKFNATARQRWVGAALV
LAVLWLYAFVTGLSPSVLRAVLMFSLATVGLALRRKTVIYNTVAVAALVLLLVNPYNLLE
VGFQLSFLAVLGIVYLQPKLYGLLEIKHWLADFIWAYFAVAVAAQLATFPLGLYYFHQFP
VYFWLANIVVVPLATLVLYSGMVALLFSWVPGVSDWLFDLHLVLTYLMNDFNVWVQRWPQ
ALINGIDISLLQTCLLYLLLFAAMLFLARKRLRYLVVAVAVVAALAGQEVWEEVRQEGQR
QLAVYSVRGSTGIGLVQGQRAVLLADSSLLRHPGNYTFNVQPHLWQVGVQQPEFIPFEKA
TAGFSPVAALPDSNQLLVWQGQRWLILSHPPRLQPASGFAVDYLLLRHNVRLKPEELQAY
TFKKLILDASSAPWYRRRLHQQLDTLGIPYYDVADSGAFVLRL