Protein Info for BNILDI_20085 in Escherichia coli ECRC62

Annotation: capsular biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 207 to 247 (41 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 347 to 364 (18 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecl:EcolC_3176)

Predicted SEED Role

"O-antigen flippase Wzx" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>BNILDI_20085 capsular biosynthesis protein (Escherichia coli ECRC62)
MSLLKSASTIAGSSVISQLIGAFSIWLISYKYDLAEVGLYALNYSIAVIGAQVCTFASQL
LIPKQSEEELTQNVVFCLLQSAILALPYALLTAWLFHQNVLFLYLLSLSNAWVLISENLS
LRTGNFRFLIFQRISVSVVVVLSVVLTNQVQMFYWTWASGMMLLTISCIARSFNFRTVTA
QHLSLKSNLVFFRTHFHHISRVGSAEVLAMANNNLPIMLINFWFSALTAGYFSVVSRFCL
SPVTIVGNAVRNTIFSKWSIDFRNNTFNYPEYQRVRFLLMVLGVICTLGVFIFYPIVMHL
GFGEDWINSIDTSRYMLPYLFPALAVSPLTVIELIFGSHRYFLRIQLEQLAIVLIAFVVT
PYFYNDYATSVIIFSVLTFIRYAFIYLAMNKRATLLKNNPVMP