Protein Info for BACOVA_05410 in Bacteroides ovatus ATCC 8483

Annotation: Ribosomal protein S27a

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 TIGR01764: DNA binding domain, excisionase family" amino acids 82 to 126 (45 residues), 35.2 bits, see alignment 6e-13 PF12728: HTH_17" amino acids 82 to 132 (51 residues), 38.9 bits, see alignment E=8.1e-14

Best Hits

KEGG orthology group: None (inferred from 56% identity to bfr:BF1226)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>BACOVA_05410 Ribosomal protein S27a (Bacteroides ovatus ATCC 8483)
MWYLITLIHTNTYLKVDNMPTIGFEIKRKCKVCGKVFVAKTLDSHYCSPKCGKVAWKRKK
DVKDRNAKLEAIAQQVSDIREYISVKEAVAMFGVERSTLYRLIKLGRIPTINMGTRLTRI
KRSEMERLFLNRSESIAEKEKPAPKIYSLEPEDCYTITEICEKYHINDSSVWAHVRKYSI
PSRQIGNYVYVPKQEIDNLYKSEVE