Protein Info for BACOVA_05192 in Bacteroides ovatus ATCC 8483

Annotation: preprotein translocase, SecA subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1105 PF07517: SecA_DEAD" amino acids 8 to 584 (577 residues), 373.2 bits, see alignment E=2.2e-115 PF01043: SecA_PP_bind" amino acids 399 to 540 (142 residues), 102.6 bits, see alignment E=4.8e-33 PF21090: P-loop_SecA" amino acids 599 to 700 (102 residues), 152.7 bits, see alignment E=2.7e-48 amino acids 700 to 768 (69 residues), 114.5 bits, see alignment 1.3e-36 PF07516: SecA_SW" amino acids 771 to 1016 (246 residues), 187.1 bits, see alignment E=9.7e-59 PF02810: SEC-C" amino acids 1085 to 1103 (19 residues), 38.1 bits, see alignment (E = 2.8e-13)

Best Hits

Swiss-Prot: 96% identical to SECA_BACTN: Protein translocase subunit SecA (secA) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

KEGG orthology group: K03070, preprotein translocase subunit SecA (inferred from 96% identity to bth:BT_4362)

Predicted SEED Role

"Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1105 amino acids)

>BACOVA_05192 preprotein translocase, SecA subunit (Bacteroides ovatus ATCC 8483)
MGFNEFLSSVFGNKSTRDMKEIKPWVEKIKAAYPEIEKLDNDALRAKTEELKKYIHESAT
AERAKVEELKASIETLELEDREEVFAQIDKTEKEILEKYEKALDEVLPVAFSIVKATAKR
FTENEEIVVTATDFDRQLAATKDFVRIEGDKAIYQNHWVAGGNDTLWNMVHYDVQLFGGV
VLHKGKIAEMATGEGKTLVATLPVFLNALTGNGVHVVTVNDYLAKRDSEWMGPLYMFHGL
SVDCIDRHQPNSDARRQAYLADITFGTNNEFGFDYLRDNMAISPKDLVQRQHNYAIVDEV
DSVLIDDARTPLIISGPVPKGDDQLFEQLRPLVERLVEAQKVLATKYLSEAKKLIASNDK
KEVEEGFLALYRSHKALPKNKALIKFLSEQGIKAGMLKTEEIYMEQNNKRMHEVTDPLYF
VIDEKLNSVDLTDKGVDLITGNSEDPTLFVLPDIAGQLSELENLNLTNEQLLEKKDELLT
NYAIKSERVHTINQLLKAYTMFEKDDEYVVIDGQVKIVDEQTGRIMEGRRYSDGLHQAIE
AKERVKVEAATQTFATITLQNYFRMYHKLSGMTGTAETEAGELWDIYKLDVVVIPTNRPI
ARKDMNDRVYKTKREKYKAVIEEIEKLVQAGRPVLVGTTSVEISEMLSKMLTMRKIEHKV
LNAKLHQKEADIVATAGLSGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRV
DRQLRGRAGRQGDPGSSVFFVSLEDDLMRLFSSDRIASVMDKLGFQEGEMIEHKMISNSI
ERAQKKVEENNFGIRKRLLEYDDVMNKQRTVVYTKRRHALMGERIGMDIVNMIWDRCANA
IENNDYEGCQMELLQTLAMETPFTEEEFRNEKKEKLAEKTFNIAMDNFKRKTERLAQIAN
PVIKQVYENQGHMYENILIPITDGKRMYNISCNLKAAYESESKEVVKSFEKSILLHVIDE
AWKENLRELDELKHSVQNASYEQKDPLLIYKLESVTLFDAMVNKINNQTISILMRGQIPV
QEAPDESAARRVEVRQAAPEQRQDMSKYRENKENLSDPNQQAAASQDTREQQKREPIRAE
KTVGRNDPCPCGSGKKYKNCHGKNL