Protein Info for BACOVA_04992 in Bacteroides ovatus ATCC 8483

Annotation: glycosyl hydrolase family 2, sugar binding domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 987 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02837: Glyco_hydro_2_N" amino acids 29 to 183 (155 residues), 64 bits, see alignment E=5.1e-21 PF13364: BetaGal_ABD2" amino acids 49 to 149 (101 residues), 22.1 bits, see alignment E=6.3e-08 PF00703: Glyco_hydro_2" amino acids 209 to 311 (103 residues), 53.9 bits, see alignment E=8.6e-18 PF16355: DUF4982" amino acids 622 to 679 (58 residues), 59.4 bits, see alignment 8.3e-20 PF18565: Glyco_hydro2_C5" amino acids 701 to 795 (95 residues), 63 bits, see alignment E=6.4e-21

Best Hits

KEGG orthology group: None (inferred from 82% identity to bth:BT_4181)

Predicted SEED Role

"Beta-galactosidase (EC 3.2.1.23)" in subsystem Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Lactose utilization (EC 3.2.1.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.23

Use Curated BLAST to search for 3.2.1.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (987 amino acids)

>BACOVA_04992 glycosyl hydrolase family 2, sugar binding domain protein (Bacteroides ovatus ATCC 8483)
MKHKLFLFVFLLTALSVINGQASERKKYNFNSEWKLRIGDFPKAKDAKFDDSKWKQVTLP
HAFNEDEAFKLSIEQLTDTVVWYRKNFRIPELKSNQKVFVEFEGVRQRGDFYLNGHYLGR
HENGVMAVGFDLTPHIKEGENVIAVRTDNDWMYREEGTNSKFQWNDRNFNANYGGIPKNV
FLYVTDNVYQTLPLYSNLKTTGVYVYAQDFDIQGRKATIHAESEVRNDSKAPRQFSYQVS
VLDADGKLMKTFQGDKVTLKAGETKTVKASATLHNLHFWSWGYGYLYTVKTALKDDNNQV
FDEVSTRTGFRKTRFAEGKIWLNDRIIQMKGYAQRTSNEWPAVGLSVPAWLSDFSNDLMV
KGNANLVRWMHVTPWKQDVESCDRVGLIQAMPAGDAEKDREGRQWEQRVELMRDAIIYNR
NNPSILFYECGNKAISREHMIEMKAVRDKYDPFGGRAIGSREMLDIREAEYGGEMLYINR
SEHHPMWATEYCRDEGLRKYWDEYSYPFHKEGDGPLYKGQPATDYNRNQDELAITMIARW
YDYWRERPGTGNRVSSGGTKIIFSDTNTHYRGAENYRRSGVTDAMRIEKDAFYAHQVMWD
GWVDTEKDQTYIIGHWNYPENTVKPVQVVSTGEEVELFLNGNSLGKGKRQYNFLFTFDNV
AFKPGKLEAVSYNKAGKEISRYALNTAGEPASLKLTAIQNPEGFHADGADMALIQVEVVD
KDGKRCPLDNRTVQFTLNGHAEWRGGIAQGENNHILDTNLPVECGINRALIRSTTTAGKV
TLTAQAKGLPSASLTLETVPVKVTGGLSSYLPQSTLKGRLDRGETPSTPSYKDSKKGVRI
VSAKAGSNNNDAEKSYDDIELTEWKNDGKLSTAWITYTLERDAEIDDICIKLQGWRSRSY
PLEVYAGNTLIWSGNTDKSLGYIHLNIEKPVRANTITIRLKGNTSDKDAFGQIIEVEAKA
ANKMELEKSSSKNQLRIIEVEFLETIK