Protein Info for BACOVA_04535 in Bacteroides ovatus ATCC 8483

Annotation: F5/8 type C domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 624 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01120: Alpha_L_fucos" amino acids 37 to 335 (299 residues), 130.3 bits, see alignment E=1.2e-41 PF00754: F5_F8_type_C" amino acids 361 to 468 (108 residues), 49.3 bits, see alignment E=5.6e-17 amino acids 528 to 609 (82 residues), 37.3 bits, see alignment E=2.8e-13

Best Hits

KEGG orthology group: None (inferred from 83% identity to bfr:BF3371)

Predicted SEED Role

"Alpha-L-fucosidase (EC 3.2.1.51)" in subsystem L-fucose utilization or L-fucose utilization temp (EC 3.2.1.51)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.51

Use Curated BLAST to search for 3.2.1.51

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (624 amino acids)

>BACOVA_04535 F5/8 type C domain protein (Bacteroides ovatus ATCC 8483)
MKKHFLIFATGLFLLSACNSVKAPEAILPIPEAKQVEWQKMETYAFVHFGLNTFNDREWG
YGDSDPKTFNPTRLDCEQWVQTFVKSGMKGVILTAKHHDGFCLWPTQLTEYCIRNTPYKD
GKGDIVRELSDACKKYGIKFAVYLSPWDRHQANYGSPEYVEYFYKQLNELLTNYGDVFEI
WFDGANGGDGWYGGAKDSRTIDRKTYYNYPRAYKMIDELQPQAVIFSDGGPGCRWVGNEH
GFAGATNWSFLRAGEVYPGYPKYRELQYGHADGNLWVAAECDVSIRPGWFYHPEEDDRVK
TVDELTDLYYRSVGHNATLLLNFPVDRDGLIHPTDSANAVNFHQNVQKQLAHNLLAGLSP
KASDERGRTFSAKAVTDGDYDTYWATNDDVTSATIEFDLPQAEKINRMMLQEYIPLGQRV
KSFVVEYNQAGEWLPVKLNEETTTIGYKRLLRFETITTDKIRVRFTDSRACLCINNIEAY
YAGETSDTYTAKAAELKSYPFTLVGVDVEEAQKGMDKNDQTTCFINGNTLLIDLGEERTI
TSFHYLPDQSEYNKGLIAAYEISVGTDSNAVNQVVAKDEFSNIKSNPILQSVYFTPVKAR
YIQLKATRMIHDGEPMGLAEIGIQ