Protein Info for BACOVA_03810 in Bacteroides ovatus ATCC 8483

Annotation: glycosyl hydrolase family 20, catalytic domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02838: Glyco_hydro_20b" amino acids 28 to 156 (129 residues), 66.7 bits, see alignment E=8.3e-22 PF00728: Glyco_hydro_20" amino acids 159 to 510 (352 residues), 391.7 bits, see alignment E=9.3e-121 PF13290: CHB_HEX_C_1" amino acids 554 to 611 (58 residues), 50 bits, see alignment 6e-17 PF13287: Fn3_assoc" amino acids 558 to 616 (59 residues), 52.5 bits, see alignment 1.1e-17 PF07691: PA14" amino acids 632 to 760 (129 residues), 86.2 bits, see alignment E=5.1e-28

Best Hits

KEGG orthology group: None (inferred from 84% identity to bth:BT_0506)

Predicted SEED Role

"Beta-hexosaminidase (EC 3.2.1.52)" in subsystem Chitin and N-acetylglucosamine utilization or N-Acetyl-Galactosamine and Galactosamine Utilization (EC 3.2.1.52)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.52

Use Curated BLAST to search for 3.2.1.52

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (768 amino acids)

>BACOVA_03810 glycosyl hydrolase family 20, catalytic domain protein (Bacteroides ovatus ATCC 8483)
MFKKLSSSFLIVSACIFSSCTPTVKQEIAILPTPVSLTEQSGSFVLKDGMKIGVSDQSLF
PAAGYLQEILRNVISSSVEVTTDKSQVDMYFQLKDTVGKPSSYKLESTPEYIRVEATDYS
GIISAITTIRQLLPATIEVQGEKQNYSIPVVQIEDAPRFEWRGFMLDASRHFWNKKEVKH
VLDLMSLYKLNKFHWHLSDDQGWRIEIEKYPLLTEKGAWRKFNTQDRTCMARAKEEDNTD
FLIPEDKIRIVEGDTLYGGYYTHDDIKEIVAYATQRGIDVIPEIDMPGHFLAAIGQYPEL
VCDGLIGWGKTFSSPICPGKDTTLEFCQNVFKEVFELFPYEYVHMGGDEVEKANWKKCPL
CQKRIRTEKLGSVEELQAWFVRDMEKFFLANGKKLIGWDEVVSDGLSSDAAITWWRSWAK
DALPTATAQKQKVIACPNEYFYFDYAQDQNSVKKILAYDPCADERLSPEQKKYIWGVQAN
LWAEWIPTMKRIEYLIVPRMIALSEIAWAEPTAKPGLEEFYRQLVPQFKRMDVMRVNYRV
PDLQGFYKVNAFIDETTVELTCPLPGTEIRYTTDGSMPTKESALYNGALEVGKTTDFAFR
TFRPDGSPSDAVRTKYVKAPYAEAVTAPAALQPGLKAVWHDFRGNLCADIDAAPVKGEYV
VESVSIPEEVKGNIGLVLTGYLEVPADGIYTFALLSDDGSTLMLDGELLGDNDGAHSPVE
IIVQKALKAGLHPIEVRYFDCNGGVLQMELVNEKGEKEVLPSAWLKHE