Protein Info for BACOVA_03653 in Bacteroides ovatus ATCC 8483

Annotation: outer membrane protein, OMP85 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 780 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01103: Omp85" amino acids 398 to 779 (382 residues), 87.9 bits, see alignment E=9.8e-29

Best Hits

KEGG orthology group: None (inferred from 90% identity to bth:BT_3807)

Predicted SEED Role

"FIG00896779: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (780 amino acids)

>BACOVA_03653 outer membrane protein, OMP85 family (Bacteroides ovatus ATCC 8483)
MKGIYSNILASCLMGIILFSGCSVTKHLPEGEVLYTGGKTVVENKSATPVGETALTEIDA
ALDKTPSTKMLGGLLPIPFKMWMYNDFVKYKKGFGKWMFNRLAANPPVFISTVNPEVRIK
VATNLLRDYGYFNGKVTYETLVDKKDSLKASILYTVDMKNPYFIDTVYYQRFTPQTLRIM
ERGRRMSYISPGEQFNVVDLDEERTRISTLLRNRGYFYFRPDYMTYQADTTLVPGGHISL
RLIPVPGLPAAAQRPYYVGDASVYLFGKNGEAPNDSMMYKNLNIHYYKKLQVRPNMLYRW
LNYQQFVRNAQMRASNRTRLYSQYRQEQVQEKLSQLGIFSYLDLQYAPKDTTAVCDTLNV
TMQATFAKPLDAELELNVVTKSNDQTGPGASFGVTRNNVFGGGESWNVKLKGSYEWQTGG
GEKSSLMNSWEMGVSTSLTFPRVVFPHWGKREFDFPATTTFRLYIDQLNRARYYKLLSFG
GNATYDFQPTRTSRHSITPFKLTFNVLQHQSEEFREITDANPALYISLKDQFIPAMEYTY
TYDNASARGIKNPIWWQSTVTSAGNLTSVIYRAFGQSFSKEDKRLLNVPFAQFMKLNTEF
RHLWNMDKNNKIASRVALGALFAYGNATIAPYSEQFYVGGANSIRAFTVRSIGPGGYHPA
ESRYSYLDQTGTFRFEANVEYRFRIFKSFWGATFLDAGNVWLMRKDEARPNSQLELKTFP
KQIALGTGVGIRYDMDILVFRLDFGIPLHLPYDTERSGYYNVTGSFMKNLGIHFAIGYPF