Protein Info for BACOVA_03596 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1191 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details PF07660: STN" amino acids 76 to 126 (51 residues), 38.9 bits, see alignment (E = 1.5e-13) TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 135 to 1191 (1057 residues), 909.3 bits, see alignment E=4e-277 PF13620: CarboxypepD_reg" amino acids 137 to 205 (69 residues), 41.9 bits, see alignment 2.8e-14 PF13715: CarbopepD_reg_2" amino acids 137 to 219 (83 residues), 67.6 bits, see alignment 2e-22 PF07715: Plug" amino acids 227 to 332 (106 residues), 65.4 bits, see alignment E=1.6e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 308 to 338 (31 residues), 59.9 bits, see alignment (E = 1.6e-20) PF00593: TonB_dep_Rec" amino acids 556 to 1072 (517 residues), 52 bits, see alignment E=2.8e-17

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1191 amino acids)

>BACOVA_03596 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MQKHCSIQILGIKRLLKATLKGIPLPMRLLIIMLCVSIGCIRATNTYAQNAILDLKVNNQ
TIETVLKIIESRTDFVFFFNSQQVNVHKRVSINVNKQNIFKILDEVFKGSDVVYSVLDKS
IILSSKRFAPDGNLKKITGKVVDTNGEPLIGVTIALKGSNRGTVSDVNGNFSLNGEEGKL
NVLNISYIGYKDQQVKVEDGKTLIITLEEDTKVLEEVVVVGYGTQKKINLTGAVAVVDDK
QVIGRSADNLSKLLQGAVPNMNVTVSNGRPGQGGSINIRGINSISSSATPLILVDGVEGT
IDAVNPNDVESISVLKDASSAAVYGARAAYGVILVTTKSGNDDKTRVSYNGRYSFGSPTV
SRDFETRGYYSAAINDMFYSTYQGSNYTNYNDEDYYEMWIRRNDKTENPERPWVVIKDGE
YKYYGNFDWYNYFMDESRPTWEHNISVSGGNKKVHYFLSGAYYDQKGVIRKNMDSFTKYN
FRSKVSIEIAPWLKISNNTSYKKDSYPFPGPGAINNLFDAISKHALASIVPINPDGTYMG
NATVITGGYRPANDLSAILEYGKHKNEDTNYFFNTTFEAVMTPVKNVTVTANYSFAQHEY
TAMNRSANYPYSRVPGEVLWKTDGYGLNTLYERSNHDWFHSYNIYGNYTNTFADVHHVSA
TAGVNYETKFFKDIKIQRNDLLSEDLTDFNLANGDEMSIAGGKNRYALFGLFYRLNYDYK
NRYLFEFSGRYDGSSRFARGHRYGFFPSVSAGWRINEEKFFAPLRKQISNLKLRFSLGAL
GNQQVGYYDYLQTISSGGTISYAFGDKNKASGASISAPNASDFTWETVVTKNIGLDLGLL
NNRLNMTADIYVRDTKDMLMASKDLPNVYGASSPKTNAANLRTKGWEASISWNDSFNLKG
KAFHYSVVLGLADNTTKVTKYNNDNKTLGTPYEGQQLGEIWGYVVDGLFKTDEEAENYPV
NQSYVNNILNISVKSQGLHAGDVKYVDLDGDNIISPTLSANDVKDQKVIGNSLPRYTYSV
RLAADWNGIDFSALLQGVGRQHWYPNGETSLFWGPYARPYCTFIPKDFLTDVWSEDNPDA
YFPRPRGYVALDVNPRELSKPNTRYLQNVAYCRLKNVTVGYSLPRTWLKALHMERVRVYF
SGENLFTFSPLHSNYIDPEHAGASTSWKSGHTNVTSYPMSKTYSFGIDVTF