Protein Info for BACOVA_03419 in Bacteroides ovatus ATCC 8483

Annotation: glycosyl hydrolase family 3 C-terminal domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 861 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00933: Glyco_hydro_3" amino acids 72 to 334 (263 residues), 146.3 bits, see alignment E=3e-46 PF01915: Glyco_hydro_3_C" amino acids 373 to 742 (370 residues), 175.9 bits, see alignment E=2.1e-55 PF07691: PA14" amino acids 456 to 595 (140 residues), 46.4 bits, see alignment E=7.5e-16 PF14310: Fn3-like" amino acids 779 to 848 (70 residues), 51.4 bits, see alignment E=2e-17

Best Hits

KEGG orthology group: K01188, beta-glucosidase [EC: 3.2.1.21] (inferred from 68% identity to bsa:Bacsa_2900)

Predicted SEED Role

"Beta-glucosidase (EC 3.2.1.21)" in subsystem Beta-Glucoside Metabolism or Fructooligosaccharides(FOS) and Raffinose Utilization (EC 3.2.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.21

Use Curated BLAST to search for 3.2.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (861 amino acids)

>BACOVA_03419 glycosyl hydrolase family 3 C-terminal domain protein (Bacteroides ovatus ATCC 8483)
MKRGWIPIMGVCLVLSFSACKQLLPYQDTSLAAEQRTEDLLPRLTLEEKVSLMQNASPAI
PRLGIKEYEWWNEALHGVGRAGLATVFPQSIGMGASFNDSLLYEVFNATSDEARVKSRIF
GDSGVLKRYQGLTFWTPNVNIFRDPRWGRGQETYGEDPYLTGQMGMAVVRGLQGPEDARY
DKLHACAKHFAVHSGPEWNRHSFDAENIDPRDLWETYLPAFKDLVQKAHVKEVMCAYNRF
EGEPCCGSNRLLMQILRDEWGYEGIVVSDCGAISDFYRPGTHGTHPDKEHASAGAVRAGT
DLECGSEYASLADAVKAGLIDEKEIDISLKRLLTARFELGEMDEQSAWSEIPTSVLNSKE
HQALALRMARESLVLLQNKNNILPLNTHLKVAVMGPNANDSVMQWGNYNGIPAHTVTLLE
AVRAKLPEGQIIYEPGCDRVDGKTLQSLFDECSINGKPGFLAEYWNNRDREGEVVATDQI
STPFHFATTGATTFAPGVEITNFSARYESVFRPSQSGDVAFRFQLDGEVTFIINGEQVAR
KIYVKNPTNLYTLQAKAGKEYHIEILFKQRNERATLDFDLGKEVGIDLNLTVKRVMDADV
ILFAGGISPSLEGEEMPVEVPGFKGGDRTDIELPDVQRDLLKALKKAGKKVVFINYSGSA
IGLVPETTTCEAILQAWYPGQAGGTAIVDALWGEYNPGGRLPVTFYKDVNQLPDFEDYSM
KGRTYRYMQQQPLFPFGHGLSYTDFTYGEAKLSKNTIAKGENVVLTIPVSNVGQRDGEEV
VQVYLRRPGDKEGPRYTLRAFKRVHIPAGKTESVAIPLTGENFEWFDVESNTMCPLEGTY
ELLYGGTSDRNKLKTIVMNVQ