Protein Info for BACOVA_03340 in Bacteroides ovatus ATCC 8483

Annotation: SusD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14322: SusD-like_3" amino acids 64 to 228 (165 residues), 60 bits, see alignment E=4e-20 PF07980: SusD_RagB" amino acids 332 to 638 (307 residues), 173.5 bits, see alignment E=8.5e-55

Best Hits

KEGG orthology group: None (inferred from 80% identity to bth:BT_3520)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (639 amino acids)

>BACOVA_03340 SusD family protein (Bacteroides ovatus ATCC 8483)
MKKYNYIIVSLLACLLTTSCNDYFDQVPDDRLSLKEIFTTRDGALRYLSNVYTFLPDEFN
QRQVHETSLYRTPGPWTGSSDEAEWTNDNKGKLINNNSIDATEGTMVLYRWKSWFSGIHE
AAVFTENVDQAPLTVTERNQWKAEARALRAIYYFYLVRTYGPVPLLEKDFPMDTPSDELQ
LPRNTVDECFDFIVSELKGAQNDGLLDDASTDKVSGYGRIDKAIAQAFIIEALTYRASWL
FNGECNYYSDLANTDGTKLFPNKPDEATKRANWQKVINECNTFFSNYGSRYHLMYTNKDG
VSVSGPDSEGFSPTESYRRAVRTLFSEMGNNKEMIFYRLDNAAGTMQYDRMPNRSGNTTN
YRGGSLLGATQEMVDAYFMSNGESPISGYSADGVTPIINEKSDYVEEGVSTTEYKGTDGT
LYAPTGTRMMYVNREPRFYVDITFSNSKWFDGTEGDYIVDFTYSGSCGKEQGSNDYTSTG
YLVRKGMDSGDRNQNLVCVLLRLTNIYFDYIEALAHVSPTHEDIWTYMNMIRKRAGIPGY
GETVNLPKPTTTEEVMELIRKEKRIELSFENCRYFDVRRWGLVNEYFNKAIHGMNVNYDG
NEFFKRTEIVKRIFDRQYFFPIPQGEIDIDKNLVQNTGF