Protein Info for BACOVA_03100 in Bacteroides ovatus ATCC 8483

Annotation: glycosyl hydrolase family 2, sugar binding domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 891 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF02837: Glyco_hydro_2_N" amino acids 34 to 179 (146 residues), 83 bits, see alignment E=7.5e-27 PF00703: Glyco_hydro_2" amino acids 195 to 300 (106 residues), 54.1 bits, see alignment E=7.7e-18 PF02836: Glyco_hydro_2_C" amino acids 308 to 610 (303 residues), 98.1 bits, see alignment E=1.7e-31 PF16355: DUF4982" amino acids 639 to 684 (46 residues), 31.9 bits, see alignment 3e-11 PF11721: Malectin" amino acids 761 to 866 (106 residues), 39.9 bits, see alignment E=1.4e-13

Best Hits

Predicted SEED Role

"Beta-galactosidase (EC 3.2.1.23)" in subsystem Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Lactose utilization (EC 3.2.1.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.23

Use Curated BLAST to search for 3.2.1.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (891 amino acids)

>BACOVA_03100 glycosyl hydrolase family 2, sugar binding domain protein (Bacteroides ovatus ATCC 8483)
MVLGMYKVYRKIILACLLLIVAGTVCGQRVTQTINDGWKFSLFEGDASTADFDVSGWTDV
SIPHTWNAKDAEDEIPGYFRGKGWYRKAVTVEELIVGQRVYLCFEGANQETNVFVNGKLV
GNHKGGYSAFTFDVTDYVHTGRNLVAVSVDNSYNPDIAPLSADFTFFGGLYRDVYLVYTS
PVQLSTTHYASSGVYLKTVGITDAQAEVCAKTFLSNALKSNQALILETEILDTDGNRVAL
SAKKVNVKAGEKNVAFEALMTIAQPKRWDVDSPYLYKVYSRLKNKKGEVLDCVVNPLGIR
EYHFDAEKGFFLNGKYRKLIGTSRHQDYKGMGNALRDEMHIRDIQLSKDMGSNFLRVAHY
PQDPVVMQMCDKLGLLTSVEIPIVNAITQSRAFMDNCVEQATEMVYQNHNYPSVIIWAYM
NEVLLRPPFNPDNKKERAEYMKSLHQIASAVEAQIRSLNSERYTMLPCHSASQIYQEAGI
TELPMLLGFNLYNGWYGGNLDGFEEKLEELHKEFPHKPLLITEYGADVDTRIHSFSPVRF
DFSCEFGSVYHEHYLPEILKRDYIVGAMVWNLNDFYSEARRNAMPHVNNKGLVSTDRERK
DGYFLYQAYLKESPVLHIASKSWKNRAGASRDGKSCTQPLKVYTNADKVEVFLNGKSLGV
YPVADKVVSVDIPFVNGKNVVDAVIEKEGREYRDQYVCDFKCVNVKNGFTEINVLLGARR
YFEDRIAEMCWIPEQAYAEGSWGYIGGEVAPNKTRYGSLPASDKDILGTDQDPIFQTQRV
GIEAFKADVPDGVYAVYLYWTELTSENKREALVYNLGNDVVREDYINRVFSVDINGVSVA
KQLNIAEEYGSERAVIKKYIVPVSQGKGLVVRFGAVESVPILNAIRIVKEY