Protein Info for BACOVA_02860 in Bacteroides ovatus ATCC 8483

Annotation: SusD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF14322: SusD-like_3" amino acids 21 to 224 (204 residues), 55.3 bits, see alignment E=1e-18 PF07980: SusD_RagB" amino acids 264 to 601 (338 residues), 151.1 bits, see alignment E=5.5e-48

Best Hits

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (603 amino acids)

>BACOVA_02860 SusD family protein (Bacteroides ovatus ATCC 8483)
MKKILMILTMALAATSCMDILDVAPEDQIASENMWTTEELADKGMAGLYFPFYATQLSST
QLRRADGLNRQGIEAMSFATDYYSNNYPVELLSLATKPANDFQVWYEWKFCYTIIHACND
AIANLHKADMSANKLARYQCEARFLRAWAYNRLNMLYQGVPVYLEPINNEDCTRGQSSVD
EVWQVILDDLTYCINNPDFPNNTLNENYGRPSKGAAYALRGMVYMWKKQYKEAGNDFKEV
EACGYGLWTGEYADFFKYENEKDKEMIFSLQFSEETGYCDNIQQMTGARDTYDGWTEIKP
SADFVDYYKNADGSDFKWSEVDGLEDWDLLTPQQREIFFCRDGLESMSSQKNALIKRVGE
DIYQKYYLNSGNEARIKKAYDNRDPRLQQTVVTPYVPVDCYKPNYAGDANQIGKQLRWPL
KEQGTNGGDFWLDKRTSAFYCYRKYNEFEKGRLISRSRCHTDWPLIRYTDVLLQYAEALA
QTDQLGEAIRLVNKVRTRAHMPALTEGGSGPCAVNGKEDMLERIRYERRVEFCLEGINFF
DEVRWGTYKETKFQGKDVNGGKSWWGDMVEYNWYYADYIWPWTAPIVETQKNPNLTKRSG
WAY