Protein Info for BACOVA_02707 in Bacteroides ovatus ATCC 8483

Annotation: SusD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14322: SusD-like_3" amino acids 22 to 227 (206 residues), 59 bits, see alignment E=7.9e-20 PF07980: SusD_RagB" amino acids 251 to 504 (254 residues), 140.9 bits, see alignment E=7.1e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>BACOVA_02707 SusD family protein (Bacteroides ovatus ATCC 8483)
MKKILICLAIAGVGLLSSGCNDWLDVLPKNEQVSPDYWKTKEQVEEVLAQGYSYMRTTVP
YLIYWGELRGGSVYAYSGSEQQKLQNFQLTASSKMCNWSAFYQLLNIANSIIKYAPEVHG
HDATYTEAAMNSHMAEAYFMRAWVNFTLVRNYKEAPLILEPYVTDSYPFNMSKSSEETFI
VQIKEDIKTALDSGAAKEFYDDDTWAGATKGRITKWALYALMADVCLWSEDYEGCIEYTD
LLINANSSHRPAFMADPEQWFTIFNPGNSNESVFEINFDVLTYNQPVDNSPSAYFTHSSS
APFQYSVAMYGRLWNETRTSNESSVRASGGAYNDLGVGAASCVWKYQGYGYMSTGYRDQQ
DANWILYRMADVLLMKAEALAWKGGTANFQAAIDLINRVRTRANVAELDVNINDVTEESM
LRYVLEERDIELAAEGKRWYDLVRFGKSKGYKYQTAFIDLIVANNASASSQWLRSVLKNT
YAWYLPIPQSDIERNSLLTQNPYYDITSN