Protein Info for BACOVA_02598 in Bacteroides ovatus ATCC 8483

Annotation: conserved hypothetical protein TIGR00245

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 37 to 58 (22 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 91 to 115 (25 residues), see Phobius details amino acids 126 to 149 (24 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details PF03649: UPF0014" amino acids 9 to 249 (241 residues), 231.4 bits, see alignment E=5.3e-73

Best Hits

KEGG orthology group: K02069, putative ABC transport system permease protein (inferred from 90% identity to bfs:BF2469)

Predicted SEED Role

"YbbM seven transmembrane helix protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>BACOVA_02598 conserved hypothetical protein TIGR00245 (Bacteroides ovatus ATCC 8483)
MGTIDISYYNLFIGLLLLAIPFFYLWKFKTGLLKPAVIGTLRMIIQLFFIGVYLKYLFLW
NNPWINFLWVIIMVFVAGQTALVRTQLKRSVLLIPITVGFLCSVVLVGIYFIGIVLQLDN
IFSAQYFIPIFGILMGNMLSSNVIALNTYYSGLKREQQLYRYLLGNGATRQEAQAPFIRQ
AIIKSFSPLIANIAVMGLVALPGTMIGQILGGSSPNVAIKYQMMIMVITFTASMLSLMIT
ISLASRRSFDAYGKLLEVTKEPRK