Protein Info for BACOVA_02182 in Bacteroides ovatus ATCC 8483

Annotation: response regulator receiver domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1338 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 785 to 808 (24 residues), see Phobius details PF07494: Reg_prop" amino acids 37 to 59 (23 residues), 23.4 bits, see alignment (E = 1.7e-08) amino acids 83 to 104 (22 residues), 23.7 bits, see alignment (E = 1.3e-08) amino acids 313 to 335 (23 residues), 23 bits, see alignment (E = 2.2e-08) amino acids 360 to 383 (24 residues), 18 bits, see alignment (E = 9.5e-07) amino acids 490 to 511 (22 residues), 15.8 bits, see alignment (E = 4.9e-06) amino acids 581 to 604 (24 residues), 20.6 bits, see alignment (E = 1.3e-07) PF07495: Y_Y_Y" amino acids 717 to 780 (64 residues), 58.2 bits, see alignment 2.4e-19 PF00512: HisKA" amino acids 835 to 899 (65 residues), 53.9 bits, see alignment 6.2e-18 PF02518: HATPase_c" amino acids 949 to 1057 (109 residues), 58.1 bits, see alignment E=4.6e-19 PF00072: Response_reg" amino acids 1094 to 1202 (109 residues), 85.1 bits, see alignment E=1.5e-27 PF12833: HTH_18" amino acids 1260 to 1336 (77 residues), 68.4 bits, see alignment 2.3e-22 PF00165: HTH_AraC" amino acids 1303 to 1331 (29 residues), 29.4 bits, see alignment (E = 2.7e-10)

Best Hits

KEGG orthology group: None (inferred from 76% identity to bth:BT_2923)

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1338 amino acids)

>BACOVA_02182 response regulator receiver domain protein (Bacteroides ovatus ATCC 8483)
MKKVLIFLICLIGYQIGCHAQMADEHYYFKNLSVQNGLSQNTVNAILQDKQGFMWFGTKD
GLNRYDGLSFRKFKHDDRTRRSIGNNFITALYEDSKGDIWVGTDVGLYIYHPEKDSFRHF
AELSIENTKIEHTVTAISGDNKGCVWVAVESQGLFCYDLEEGKLRNYTLKNFPFISTNVQ
SFVFDNSGTLWIGCYGDGLFFSKDRLQTLHPYVSPVDNQKTYENDVVIGLVKGAYNCLYV
GSLKGGVKELNLTSNKLHDLLSEDENGESVFCRELLVASDNELWIGAESGLYIYNLRMGK
YVHLRSSINDPYSLSDNAIYSLCKDREGGIWIGSYFGGVNYYPRFYTYFEKYYPKGTDNG
LHGKRVREFCQDNQGILWIGTEDGGLNRFNPKTKTFSFFTPSSAFTNVHGLCLIDNHLWV
GTFSKGVKVVDTRTGAIVKTYQKTDSPRSLIDNSVFSICRTTTGDIYLGTLFGLLRYNRQ
SDDFDRIPELNGRFVYDIKEDSGGNLWLATYANGAYCYNVSEKKWKNYLHDENNPKSLPY
DKVLSIFEDSHRQIWLTTQGGGFCRFQPDTETFANYNLSAGLPNDVVYQIVEDKEGFLWL
TTNNGLVCFQPTTGVMKVYTTSNGLLGDQFNYRSSFETEDGTIYLGSIDGFIAFNPKNFS
ENKFIPSVAITDFFLFGKEVYAGEPGSPLEKSITFSDQLVLQSNQNSFSFRVAALDFQAP
KTSRIMYKLEGFDTDWLTVGESPIVTYSNLRYGDYTFRVKVANSDGVWSDDEVSLGVHIL
PPFYLSIWAYCVYALLIIGCSLYTVMYFKRRSNSKHRRQMEKFEQEKEREVYHAKIDFFT
NVAHEIRTPLTLIKGPLENIILKKQVDAETREDLNVMKQNTERLLNLTNQLLDFRKTESQ
GFRLNFAKCNVTEVLKETHVRFTSLAKQKGLEFTLQVPEEDFYAHVNREAFTKIISNLLN
NGVKYAESYVHISLEVPETDDNNSFCIRTENDGVIIPNEMKEEIFKPFVRFNEKEDGKVT
TGTGIGLALSRSLAELHQGTLAMGEGEENNTFCLILPIVQDMTITLTPEPEVEIDRMNEI
PVGETEKKDNRPTVLVVEDNPDMLAFVVRQLSKEYTVLTATNGAEALQVLDGNYVNLVVS
DVVMPVMDGFELCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYLEKPFSVEYL
QACASSLIQNREKLRKAFAQSPFVAANTMALTKADEDFIKKLNEVIQVNYSNPEFSMDDM
ADSLNMSRSNFYRKIKGVLDLSPNEYLRLERLKRAAQLLKEGENRVNEICYMVGFNSPSY
FAKCFQKQFGVLPKDFVS