Protein Info for BACOVA_02065 in Bacteroides ovatus ATCC 8483

Annotation: response regulator receiver domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1315 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 758 to 780 (23 residues), see Phobius details PF07494: Reg_prop" amino acids 40 to 62 (23 residues), 18.6 bits, see alignment (E = 6.5e-07) amino acids 302 to 324 (23 residues), 17.3 bits, see alignment (E = 1.6e-06) amino acids 350 to 372 (23 residues), 16.6 bits, see alignment (E = 2.7e-06) PF00512: HisKA" amino acids 802 to 865 (64 residues), 43 bits, see alignment 1.5e-14 PF02518: HATPase_c" amino acids 915 to 1019 (105 residues), 70.5 bits, see alignment E=6.4e-23 PF00072: Response_reg" amino acids 1060 to 1170 (111 residues), 87.9 bits, see alignment E=2.1e-28 PF12833: HTH_18" amino acids 1228 to 1306 (79 residues), 75.2 bits, see alignment 1.6e-24 PF00165: HTH_AraC" amino acids 1268 to 1304 (37 residues), 33.6 bits, see alignment (E = 1.3e-11)

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1315 amino acids)

>BACOVA_02065 response regulator receiver domain protein (Bacteroides ovatus ATCC 8483)
MSKAHVLKRYSFLIWILFFVLSTKAEQQDYYFRQISLEQGLSQSRVQCIYRDHLGVIWIG
TKWGLNSYDQSELKSYFHDREQPNSLPDNFIRFITEDRLGDLYVSTNKGIAIYNKAENQF
QPLKYNGKPFNAWSYLQIGDNFLFGGEETLYQYNLTDKSITTIFPDIDGDKLKCINRIFQ
WSPDVLITSSKKDGLWMYDLTKKKMYRCPFVKEREINTIFVDSQNRLWVSFYGKGIACYS
KEGKRLFSLSTKNSGLNNDIIFDFLEKDNQLWIATDGGGINILDFQTMKFSHLKHISDDE
QSLPNNSIYRLYKDQMDNIWIGSIHGGLFAIKKVFIKTYKDVPLNNLNGISERTVVSIFE
DKDTLLWIGTDGGGINSFDQKTNTFHHYPTTYGEKVTSITNFSENELLLSCFNKGVFTFN
KRTAQMQPFPIINDSISKREFSSGDLVNLYATKDNIYILGAKVYIYNKHTRQTSILYAPQ
IDIQRQIAMQAIYSDDTHLYLMGTNNLFKLNFKTNELSSLVNMKEGDDFTSACRDDKGNF
WIGSNFGLLFYNKQTGKTEKIHTNLFNSVSSLAYDKKGKVWIGAQNMFFAYIINEKRFVI
LDESDGVPSNELIFTPIPALRTPNLYMGGTMGLVRINTDIIFESNSSPILKLLEVKLNGK
STLKQVNNNCISIPWNHSSFNIKVIADEKNSFRKHLFRYVITGKDKMVIESYLQTLELGT
LASGEYTISVSCDTSNGEWSQPTEILTIIVSPPWWKSTWFIILCIFFAFLVAGMVFFSLI
RKKENRLKREMREHEKKIYEEKIRFLINISHELRTPLTLIYASLKRILNKEVKQDELPEY
LQGAFKQANQMKDIINIVLDARKMEVGQEVLHISSHPLHKWIQEVAETFQTASKAKEIEI
TYDFDDSIQYIAYDDTKCKVVLSNLIMNALKYSPNQTRIVIKTIRTNESIQVHVQDQGIG
LDNVDIKKLFTRFYQGKHNEGGSGIGLSYAKMLIDLHGGRMGAFNNKDRGATFFYEIPAN
LQEQEVSCPQHSYLNELLSSPEEEEKIESEAFSLQGYSLLIVEDKQDLREFLKSALKDKF
KKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLCKEIKENLNISHIPVILLTARA
DSESQMLGYKLRADAYLPKPFEMEMLLSVIQNQMRNREYIKSRYRGNQFILSPQEATFSN
ADEQFMIKLNEMIDQNLSQPDLDVKFLTTQMAMSRTSLYNKIKELTGMGANDYINRRRID
KAIILLTQSGMSITEISEQVGFTYQRYFSTLFKEMKGMTPSQFRAQHGSTQQQSE