Protein Info for BACOVA_01863 in Bacteroides ovatus ATCC 8483

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 359 to 380 (22 residues), see Phobius details PF13176: TPR_7" amino acids 108 to 133 (26 residues), 15.1 bits, see alignment (E = 8e-06) amino acids 227 to 252 (26 residues), 14.6 bits, see alignment (E = 1.2e-05) PF13181: TPR_8" amino acids 108 to 134 (27 residues), 14.4 bits, see alignment (E = 1.4e-05) amino acids 223 to 250 (28 residues), 13.8 bits, see alignment (E = 2.2e-05) PF13374: TPR_10" amino acids 221 to 253 (33 residues), 16.2 bits, see alignment (E = 3.4e-06)

Best Hits

KEGG orthology group: None (inferred from 66% identity to bth:BT_3442)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>BACOVA_01863 tetratricopeptide repeat protein (Bacteroides ovatus ATCC 8483)
MRKSIAIIITSILVLSGCNKQQSVSDRLLNEVEKAIAINPDSASNLLKSISSPEKLDDKA
FARWCMLSGKITDEIFNSILPTYQLERAYDWYSSHGSPDEQVQILIYLGRSYFADGDYDK
AMSIYTNALDIAGKNKLNNLIGYTYDYIGDLYREKFMFTEAIKKYETAAECFKKENNTDS
YACALKNIGREYACIDSLSCAIEILTIADSVAANTKDIEVTASINNALGNIYVMREEYDK
AEKYFLKALSTGKEKMPDYVALIDLYTTTDSIDKAKELLSKIPQDDPQYTCSINYLYYQI
HNAERDYKEALAYLEEYVDMVDSIVYADSQSKILNIESKYNHLKISQEVDRLKIKQQSYI
IFSVICISCLLLIMIVYLLYRKQAKEKIHRQQDELNRIKTDLTYVSLELEEKKKLLDTFK
EKDDNYNKIEKEIALLTSNYKELQHKSLENSPTFKELVRLAKQNKPRNDKPLITDKQWEL
IADEITYIYPNLSKYLYSLCPNLPEQDFLYCCLCMCGFDTNTEAKLLNIASDSVRKKRFR
LREKLNIALLNDNTTLYEYLIENMH