Protein Info for BACOVA_01572 in Bacteroides ovatus ATCC 8483

Annotation: pyridine nucleotide-disulfide oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 854 PF07992: Pyr_redox_2" amino acids 21 to 304 (284 residues), 214.4 bits, see alignment E=1.2e-66 PF13738: Pyr_redox_3" amino acids 86 to 288 (203 residues), 37.2 bits, see alignment E=1.1e-12 PF00070: Pyr_redox" amino acids 171 to 249 (79 residues), 62.7 bits, see alignment E=1.9e-20 PF02852: Pyr_redox_dim" amino acids 350 to 452 (103 residues), 50.9 bits, see alignment E=8.6e-17 PF00581: Rhodanese" amino acids 483 to 564 (82 residues), 62 bits, see alignment E=3.3e-20 PF01206: TusA" amino acids 617 to 685 (69 residues), 69 bits, see alignment E=1.3e-22 PF13686: DrsE_2" amino acids 702 to 853 (152 residues), 200.5 bits, see alignment E=8e-63 PF02635: DsrE" amino acids 793 to 848 (56 residues), 24.5 bits, see alignment 1.4e-08

Best Hits

KEGG orthology group: None (inferred from 89% identity to bth:BT_2434)

Predicted SEED Role

"NADH dehydrogenase (EC 1.6.99.3)" in subsystem Carboxysome or Respiratory dehydrogenases 1 (EC 1.6.99.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.99.3

Use Curated BLAST to search for 1.6.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (854 amino acids)

>BACOVA_01572 pyridine nucleotide-disulfide oxidoreductase (Bacteroides ovatus ATCC 8483)
MNISSIQFVLSTGNYLRYKQMKIIIIGGVAGGATTAARIRRVDETAEIVLLEKGKYISYA
NCGLPYYIGGVIEERDKLFVQTPEAFSTRFRVDVRTENEAIFIDRKRKTVTIRQSSEDTY
EESYDKLVISTGASPVRPPLPGIDLSGIFTLRNVTDTDRIKEYIKSHAPRKAVVVGAGFI
GLEMAENLHAQGAKVSIVEMGNQVMAPIDFSMASLVHQHLMDKGVNLYLEQAVASFSRDG
RGLKVTFKNGQSISADIVILSIGVRPETNLARAAELTIGPAGGIAVNDYLQTSDESIYAI
GDAIEFRHPITGKPWLNYLAGPANRQGRIVADNVLGAKIPYEGSIGTSIAKVFDMTVAST
GLPGKRLRQEEIDYMSSTIHPASHAGYYPDAMPMSIKITFDKKTGRLYGGQIVGYDGVDK
RIDELALVIKHEGTIYDLMKVEQAYAPPFSSAKDPVALAGYVAEDIITGKNNPVYWRELR
DIEMENKFLLDVRTPDEFSLGSLPGAVNIPLDELRDRLAELPKDKMIYTFCAVGLRGYLA
YRILTQHGFDKVRNLSGGLKTYRAATTPIIIREENGNEIDESPIQKETASQTSQPNVSTA
PITAAADASATSAKTVRVDACGLQCPGPILKMKKTMDTLVSGERVEITSTDPGFPRDAAA
WCSSTGNQLISKDTSGGKSIVVIEKGEPKSCNIVTSCEGKGKTFIMFSDDLDKALATFVL
ANGAAATGQKVTIFFTFWGLNVIKKLHKPETEKDIFGKMFGMMLPSSSKKLKLSKMSMGG
MGGKMMRYIMNKKGIDSLESLRRQALENGVEFIACQMSMDVMGVKQEELLDEVTIGGVAT
YMERADNANVNLFI