Protein Info for BACOVA_00687 in Bacteroides ovatus ATCC 8483

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 140 to 157 (18 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details PF03006: HlyIII" amino acids 9 to 209 (201 residues), 161.1 bits, see alignment E=1.7e-51

Best Hits

Swiss-Prot: 40% identical to HLY3_BACSU: Hemolysin-3 homolog (yplQ) from Bacillus subtilis (strain 168)

KEGG orthology group: K11068, hemolysin III (inferred from 88% identity to bth:BT_1983)

Predicted SEED Role

"COG1272: Predicted membrane protein hemolysin III homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (216 amino acids)

>BACOVA_00687 hypothetical protein (Bacteroides ovatus ATCC 8483)
MKNKRYNHIEEWANTLSHGIGILLGIVAGYFLLEKASENMEPQWAVACVSVYLAGMLSSY
ISSTWYHGSRPGKLKELLRKFDHGAIYLHIAGTYTPFTLLVLRHAGGWGWGIFAFVWLSA
IAGFILSFKKLKEHSNLETACYVGMGACILVAMKPLLDHLGELGATTAFWWLIGGGVSYI
VGAVFYSLRKPYMHATFHLFCLGGSIGHIIAIWLIL