Protein Info for BACOVA_00054 in Bacteroides ovatus ATCC 8483

Annotation: F5/8 type C domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01120: Alpha_L_fucos" amino acids 51 to 346 (296 residues), 121.2 bits, see alignment E=1.4e-38 PF00754: F5_F8_type_C" amino acids 364 to 478 (115 residues), 44 bits, see alignment E=4.9e-15 amino acids 588 to 699 (112 residues), 75.3 bits, see alignment E=9.9e-25 PF13290: CHB_HEX_C_1" amino acids 510 to 565 (56 residues), 41.8 bits, see alignment 1.7e-14 PF13287: Fn3_assoc" amino acids 515 to 568 (54 residues), 34.5 bits, see alignment 3.5e-12

Best Hits

KEGG orthology group: K01206, alpha-L-fucosidase [EC: 3.2.1.51] (inferred from 57% identity to sli:Slin_1415)

Predicted SEED Role

"Alpha-L-fucosidase (EC 3.2.1.51)" in subsystem L-fucose utilization or L-fucose utilization temp (EC 3.2.1.51)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.51

Use Curated BLAST to search for 3.2.1.51

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>BACOVA_00054 F5/8 type C domain protein (Bacteroides ovatus ATCC 8483)
MIRRKVFLLTAIAMMAIASGSVYAQSGLEAVGPVPNTMQLEWQRMEQYAFIHFSINTYTD
QEWGDGSNDPKLFNPTELDCRQWARVCKESGLKGVILTAKHHDGFCLWPSKYTEYSVKNS
PWREGRGDLVRELSDACREFGLKFGVYLSPWDRNRADYGRPSYVEYFRNQLTELLTNYGD
VFEVWFDGANGGWGYYGGARENRVIDRATYYDWPGTIELIRKLQPNAIIWNEAGPDIRWC
GNEGGSIGETNWSRFDAHEFVPGTADTDVLRFGREMGTDWVPGEVNVSIRPGWFYHTYED
SKVKSLSQLLNIYYNSVGRNATWLLNFPIDRRGLIHENDVKAMKELKVTLDQTFADNLAR
KTKATADSELSSKYSAAKAIDGKADTYWTAADGKKPVAITLKFKRPTTVNRLLIQEYIQL
GQRVKSFKVEALVSNAAVDGHLPKQEWKELARETTIGYKRILRFGTVKADALRISIDDSD
GTPLLSNVELYNAPQILHAPAVTRGKDGEVVIIPSDHESAVFYTLDGTVPTRSSRRYTGP
VPTEGRVSVKAISVDETTGRESAISAESFDISHKKWAVISADRNAVWAIDGNHGSNWHQR
GAMPADLTIDLGEKVEMRGFRYLPDQSALFASGFITFYEFYVSDNGSNWRKVTEGEFSNI
RNNPAAWHTVEFAPVKARYVRLRAKANSSNDNVAGYSEFDIITN