Protein Info for B158DRAFT_2233 in Kangiella aquimarina DSM 16071
Annotation: Acyl-CoA dehydrogenases
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to FADE_YERPE: Acyl-coenzyme A dehydrogenase (fadE) from Yersinia pestis
KEGG orthology group: K06445, acyl-CoA dehydrogenase [EC: 1.3.99.-] (inferred from 97% identity to kko:Kkor_0799)MetaCyc: 58% identical to medium-chain acyl-CoA dehydrogenase (Pseudomonas aeruginosa PAO1)
RXN-13615 [EC: 1.3.8.7]
Predicted SEED Role
"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)" in subsystem Isoleucine degradation (EC 1.3.99.2)
MetaCyc Pathways
- oleate β-oxidation (31/35 steps found)
- fatty acid salvage (5/6 steps found)
- adipate degradation (4/5 steps found)
- pyruvate fermentation to butanol II (engineered) (4/6 steps found)
- pyruvate fermentation to hexanol (engineered) (7/11 steps found)
- 2-methyl-branched fatty acid β-oxidation (9/14 steps found)
- 1-butanol autotrophic biosynthesis (engineered) (16/27 steps found)
KEGG Metabolic Maps
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Brassinosteroid biosynthesis
- Butanoate metabolism
- Caprolactam degradation
- Fatty acid metabolism
- Geraniol degradation
- Valine, leucine and isoleucine degradation
Isozymes
Compare fitness of predicted isozymes for: 1.3.8.7, 1.3.99.-, 1.3.99.2
Use Curated BLAST to search for 1.3.8.7 or 1.3.99.- or 1.3.99.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (823 amino acids)
>B158DRAFT_2233 Acyl-CoA dehydrogenases (Kangiella aquimarina DSM 16071) MMGLLQIVVMLLVVGFCAYQRMAMKKAMIINAVALVVLWIHGGFTWGLFISLLIFAVVAT FYLLPDLRIDWISRKAYLFMQKVLPPMNETEKTALEAGDVWWEGDLFRGNPDWNKMLTIA KPALTEEEQSFVDNETEELCSMLDDWDIVHKRKDLPAEVWQFIKDKGFLGMIIPKEYGGK GFSALAHSTVVTKIATRSGSAAVTVMVPNSLGPGELLLHYGTQEQKDHYLPRLAKGEEIP CFALTSPVAGSDAGAIPDKGIVCKGEYQGKEVLGIKLTWNKRYITLAPVATIVGLAFKLY DPDNLIGDKEDYGITCALIPADHPGVEIGQRHLPMNQAFMNGTTTGKDVFIPMDMLIGGQ EFAGQGWRMLMESLAAGRSISLPAMGTAVAKLSYRMTGAYSLVREQFKTPIGRFEGVEEA MARIAGLAYRTEASRVMTAGAVDLGIKPSVVSAIAKYHMTEMGREIMNHSMDIHGGRAII MGERNYLANGYMSQPIGITVEGANILTRNLMIFGQGAIRCHPYVFREMLAAQMEDTEEGV KRFDSLLFRHIGYGVSNFARTFALGLSASKFAKKPVGGQTGKYYQHLTRMSSALALTSDI AMGILGGDLKRKERLSARLADVLSHLYMCSAVLKYYQDNDRPLADLPYVKWNMEYGLHKI QEAFYDFYENFPIKAVGKVLRFIAFPYGKSYSYPSDRLEQEIVKPMMQNCEIRDRITEYA YVGKTADDVTGRVELAFLKVLAADEVRRKLRKAMKAGELDKHATNMERIEQAIEKGIINA EEQQILVDAEEARMDVIQVDDYSHEEISGVVEDKPKKKKSKSS