Protein Info for B158DRAFT_1328 in Kangiella aquimarina DSM 16071

Annotation: c-type cytochrome biogenesis protein CcmF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 46 to 63 (18 residues), see Phobius details amino acids 92 to 110 (19 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 249 to 266 (18 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 314 to 332 (19 residues), see Phobius details amino acids 352 to 375 (24 residues), see Phobius details amino acids 389 to 406 (18 residues), see Phobius details amino acids 426 to 449 (24 residues), see Phobius details amino acids 455 to 474 (20 residues), see Phobius details amino acids 495 to 518 (24 residues), see Phobius details amino acids 621 to 640 (20 residues), see Phobius details TIGR00353: cytochrome c-type biogenesis protein CcmF" amino acids 53 to 645 (593 residues), 776 bits, see alignment E=1.5e-237 PF01578: Cytochrom_C_asm" amino acids 89 to 296 (208 residues), 177.9 bits, see alignment E=2.3e-56 PF16327: CcmF_C" amino acids 316 to 642 (327 residues), 403.6 bits, see alignment E=6.6e-125

Best Hits

KEGG orthology group: K02198, cytochrome c-type biogenesis protein CcmF (inferred from 91% identity to kko:Kkor_0983)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmF" in subsystem Biogenesis of c-type cytochromes or Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF (Kangiella aquimarina DSM 16071)
MIPELGNFFLIMAFINAILLGTLPFYGAQTNHKGLIQFAHKASTSIFLLMLASFVCLTIS
FIQNDFSVAYVANHSNTQLPIYYRISAVWGSHEGSLLLWVLILAGWIFAVSKFSKSLPDT
MIARVLGVMGLIAVGFVSFTLFTSNPFERALPFIPIDGADLNPLLQDFGLIVHPPMLYMG
YVGFSVVFAFAIAGLLQGELDYKWAKWSRPWTTVAWIFMTLGIALGSWWAYYELGWGGWW
FWDPVENASFLPWLAGTALIHSLAATEKRAAFKSWTVLLAILTFSLSLLGTFLVRSGVLT
SVHAFANDPVRGKFILMFLAIVVGASLILYAIQSSKVRSKSDYTLVSREIALLFNNALLA
VSTFVVLLGTLHPLIVEAFTDGKSSVGPPYFNLMFSVFFIPILLLMPLGQQISWKKDDLP
ALLKKYVWWFLSCIFLGLLLTFGLNGFTFTDIEPMAILGTILGLWVIAGTVKYIQLQSAK
SQSRLAGVRKISRSYWGMILAHIGVAVTTLGVVLTSYYSIEKDIRIEIGETVEVEGLSVH
FKDFKNIQGPNYIASKAIFDVTKDDDFIAQLKPEKRRYNASQMVMTEAAIDPGLFRDVYI
AMGEPLDNSAWAIRVYYKPFVRWIWLGAIFMALGGILAMTDKRYREKKLKKKASQEANTN
GQ