Protein Info for Atu8184 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details PF06993: DUF1304" amino acids 28 to 134 (107 residues), 140.6 bits, see alignment E=9.7e-46

Best Hits

KEGG orthology group: K08987, putative membrane protein (inferred from 100% identity to atu:Atu8184)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U4U8 at UniProt or InterPro

Protein Sequence (137 amino acids)

>Atu8184 hypothetical protein (Agrobacterium fabrum C58)
MSARPVKTAGAGHHGLEEPPMIASILIAVVAAIHIYIVILEMLLWEKPAGRKAFGLSADF
ARQTKVLAANQGLYNGFLAAGLIYGLTQGDEGLSFKVFFLLCVLVAGIFGAVTANMKILF
IQALPALFALGFLWIGA