Protein Info for Atu8175 in Agrobacterium fabrum C58

Annotation: putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 936 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 628 to 648 (21 residues), see Phobius details amino acids 659 to 676 (18 residues), see Phobius details PF07584: BatA" amino acids 6 to 80 (75 residues), 68.3 bits, see alignment E=6.6e-23 TIGR02226: N-terminal double-transmembrane domain" amino acids 7 to 85 (79 residues), 90.8 bits, see alignment E=2.7e-30 PF13709: DUF4159" amino acids 700 to 916 (217 residues), 187 bits, see alignment E=3.1e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu8175)

Predicted SEED Role

"FIG003603: membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U553 at UniProt or InterPro

Protein Sequence (936 amino acids)

>Atu8175 putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif) (Agrobacterium fabrum C58)
MSALPFVFTSPYILFGLLALPAIWWLLRLTPPRPKAEVFPPLKILATVLKREETPSKSPW
WLTLLRIALAAAVIFALADPVVNPRNNSIAGSGPLVLVVDNSWASAPDWERRVATAQALI
GDAERADRPVSISFTADAEHDAVSGTTAVALDKLAAAKPKPLVPDRARTAEAITEALNGT
APGTLAYIADGVQTAQDESAMRTLASLSPAEFRIVRGDGKAVAAITDATNNADAMSVTLS
RLDTAQAASLTVNAQDSQGRILANGTASFAPGAAETTATVEAPFELRNDFARLSIEGVST
AGAVHLLDDGFRRRRVALLAGETGNDFQPLLQPLYYISRALQPFVDLIPQRQADLAQAIP
EILQSNPSVIVMADIGRLPQETYVPLQRWLAGGGTLIRFAGPRLAAAPADDPLVPVTLRQ
GERALGGALSWAEPQPLADFPAFGAFAGMPKADGILVKRQVLAEPTPDLAERTWASLADG
TPLVTTRNVEAGRIVLFHVSAEASWSDLPISGHFVDMLRRIVQLSKAGGASASANAPATA
LPPFRLLTAEGAMSAEIGTARPLEMRAGQPPRTGFDNPPGLYGTEDGFVALNLLPAGATL
RPLDTSAAGVSTTNEALIGETAKSLRPALFIAAFMMLIADSLIVLFMNGAFARLPKARSA
TVATLLLALGAFAAMSPTDARADDPKPGDEQIFERLDTTHLAYVRTGEDDVDRISEQGLQ
GLSEFLTWRTTLEPGQPVGLDISKDELSFYPIIYWPVSATAPMPSSAAISRIDAYMRAGG
TVLFDTRDQFSSLDIGATSANGERLQAILANIDIPPLEPVPEDHVLTRSFYLLTNFPGRY
NGSPLWVESRQGAAKTTSGLSSSGDGVTPIMITGNDFAGAWAVDAQGAPVLPTVPPDEMQ
REHAFRSGVNIMMYMLTGNYKADQVHVPALLERLGQ