Protein Info for Atu8174 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 153 to 170 (18 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details PF01569: PAP2" amino acids 100 to 224 (125 residues), 64.4 bits, see alignment E=4.6e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu8174)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U554 at UniProt or InterPro

Protein Sequence (281 amino acids)

>Atu8174 hypothetical protein (Agrobacterium fabrum C58)
MDNDLSHMRITIWVTLVALALVILFATFPSIDLRFSALFFSSTGQPWPGREPFPEWLRDT
LREGAELATLLAFLVLVGNLRLGALQRTGWRVWAFLCGPVILCAGLLVNGVLKAMIGRAR
PFSVTEFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASFFLPLCVLVWPRLRPLGQWMV
GVLAAGAIILMSGLRIAAGGHFLSDVVMSILFSALTTLFLYRVLAISRHRHLFTGDAVSA
DTISLWRNGRHAVLARVRRWWPKIKAAASRLRPPGAGAASS