Protein Info for Atu8126 in Agrobacterium fabrum C58

Annotation: putative phage tail protein I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 TIGR01634: phage tail protein I" amino acids 8 to 75 (68 residues), 50.1 bits, see alignment E=1.4e-17 PF09684: Tail_P2_I" amino acids 8 to 141 (134 residues), 79.9 bits, see alignment E=8.9e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu8126)

Predicted SEED Role

"putative phage tail protein I"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U5K6 at UniProt or InterPro

Protein Sequence (221 amino acids)

>Atu8126 putative phage tail protein I (Agrobacterium fabrum C58)
MSDVGVLLPSSAEPFEKALAAGMSDDLPIPYAVLMDPYQTPARFLPWLAVHHSVDLWFDD
WTEERKREMIAQCAGVSTLYPASPLGALKGTLAGLKRYLAFVDAEIVDRIAHPNRFTFGR
AVIGRTPIAHQPFVAHYLVRVTLTAPKNRFQIGRSAFGRAAMTAIDLEPIRRAKHAMKTA
KTPETIYSVSFAWRRGITFNDNIFIDGSHAIGGYMDRKRLD