Protein Info for Atu6185 in Agrobacterium fabrum C58

Annotation: virA/G regulated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 840 PF04730: Agro_virD5" amino acids 48 to 168 (121 residues), 164.5 bits, see alignment E=2.2e-52 amino acids 167 to 837 (671 residues), 1447.4 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu6185)

Predicted SEED Role

"Protein VirD5 in virD operon"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL19 at UniProt or InterPro

Protein Sequence (840 amino acids)

>Atu6185 virA/G regulated protein (Agrobacterium fabrum C58)
MRPSGNPNVDLSGSTASLAEVPAGATPVLNLIEPRNRPADDSLEGQTDRGEHPSASFDYD
GMKLGAAEREAYENWCPSNRPTWKDLVLRARLDAIDSSAWLPDLGEESPLIFRYEGIPLG
EGERQAYKEWQEEAQPTWEDLVVNARMAVPDPCADVADEHNPLKEGEEFRSEASKRKRKK
PIDQDENSPTSFYYDGMRLGEPEREAYDNWGNAEPPTWKDLVLKARLDAIDSSAWLFASE
GSSSTFEYEGIPLGEGERQAYKEWQEDAQPTWEDLVINARMAELDHPSWITDEHNSLEEN
LEFRPDARQASLKDSTDQRKSSSASFIYDGMKLGEPEHAAYENWSKPERPSWEALILDAR
QASIASSSVSNSLLAKTSSPVFLYEGMSLGDAERQSYGRWRQPAQPRWQNLVVNARLADL
DPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALGQSDSGRPAFAYLAAQEASHLQSPA
CSQLETRRALNFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGKFGAQ
GLLSEDCGQAAEPSPSEQTTRPRTDNIGTYASRKNERARLATETGKYESEHIFGFKVVHD
TLRATKEGRRLERPMPAYLEYKELHRQHVGTGRGRTGLVGRGWPDDASYRADQRATLSDP
VASAEGATASNGYQLNQLGYAHQLATHGLQSETPDGVTMPIQVATISYNYTVSRDPVLSP
PSKEQAPPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYDVKKDLDAKQL
GVRQKKQALVAALNRTAGLIGASPLEAQSSTAEVEYTTDEPDERRVYDPRDRGRDKAFNR