Protein Info for Atu6162 in Agrobacterium fabrum C58

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details

Best Hits

Swiss-Prot: 67% identical to Y4MC_SINFN: Uncharacterized protein y4mC (NGR_a02560) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 100% identity to atu:Atu6162)

Predicted SEED Role

"y4mC gene in pNGR234a homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKU1 at UniProt or InterPro

Protein Sequence (236 amino acids)

>Atu6162 conserved hypothetical protein (Agrobacterium fabrum C58)
MSLCPSKCFRIAALAAASIVLGTQIAIAQEPSIGSQWLNTPASRVEALAVLQTLNANLLS
NASATLTLDRWCAGHKLAPEGSKILAQRVRGQAKPADDHIRELLTVGPDEPIAYRRVRLV
CGDRVLSEADNWYVPARLTAEMNQALNTSDIAFGRAVQALNFTRTNLSAKLLWSPLSEGW
DMDGLIASGRGSPTLPPFLLEHRAVLKLPDGTPFSTLVESYTSKVLDFPVPRSLAQ