Protein Info for Atu6101 in Agrobacterium fabrum C58
Annotation: helicase, SNF2 family
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: None (inferred from 100% identity to atu:Atu6101)Predicted SEED Role
"FIG00986851: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A9CKW2 at UniProt or InterPro
Protein Sequence (1693 amino acids)
>Atu6101 helicase, SNF2 family (Agrobacterium fabrum C58) MSHDDPFTIDLFGNTALSSGLGLGVMAFASNFGPDDDPDPTTPAPALPIAAVVRPSCPPC RARGLNFHLADDRGLARRWKDRARANIAAIRLAAEIEAGQRFATREEQETLIRFTGFGAS DLANGVFRRPGELEFRKGWDEIGSDLEDAVCETDYASLARCTQYAHFTPEFIVRAIWSAL QRLGWRGGRVLAPGIGTGLFPALMPEALRDLSHVTGVELDPVTARIVRLLQPRARILTGD FARTELPASFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYFVARSIDLLKPGAFAAFVTS SGTMDKADSSAREHIAKTADLIAAIRLPEGSFRADAGTDVVVDILFFRKRKVAELEGDLS WLDIEEVRPATADEGAIRVNRWFAQHPDFVLGTHALTSGPFGETYTCLAPDGEDLDAALS AAVHLFPEGRYDGEPTQIDLDLEDATDDSPRDLPAGRHVREGSFFVDNARGLMQVIDGEP VAVKVRKGRNADGIPEKHVRIIRKLISVRDAVRVVLKAQELDQPWKDLQVRLRIAWSSFV RDFGPINHTTVSITEDPETGKTRESHRRPNLQPFADDPDCWLVASIEDYDLENDTARPGP IFTDRVISPPAPPVITSAADALAVVLNERGHVDRDHIAELLHRDPEDVVTELGSAIFRDP ADGSWQMADAYLSGHVREKLKVADAAAGLDPAYERNVSALTAVQPVDLRPSDITARLGAP WIPAGDVVAFVKEMMGTDIRIHHMPELASWTVEARQLSYLAAGTSEWGTDRRHAGELLSD ALNSRVPQIFDTIRDGDSEKRVLNVVDTEAAKEKLHKIKQAFQRWIWSDPDRTDRLARVY NDRFNNIAPRKFNGDHLKLPGASGAFVLYGHQKRGIWRIISAGSTYLAHAVGAGKTMTMA ASIMEQRRLGLVAKAMQVVPGHCLAQAAREFLALYPTARILVADETNFSKDKRARFLSRA ATATWDAIIITHSAFRFIGVPAAFEQQMIHDELELYETLLLKVEDEDRVSRKRLERLKEG LQERLEALSTRKDDLLTIAEIGVDQIIVDEAQEFRKLSFATNMSTLKGVDPNGSQRAWDL YVKSRFIETINPGRALVLASGTPITNTLGEMFSVQRLMGHPALMERGLHEFDAWASTFGD TTTELELQPSRKYKPVSRFASFVNVPELIAMFRSFADVVMPADLREYVKVPAISTGRRQI VTSKPTQAFKHYQMVLAERIKAIEEREGPPQPGDDILLSVITDGRHAAIDLRLVDADNDN EADNKLNNLISNAFNIWKATEGSTYLRHDGKSFELTGAAQMIFSDLGTISVEKTRGFSAY RWIRDELIRLGVPASQIAFMQDFKKSEAKQRLFGDVRAGSVRFLIGSSETMGTGVNAQLR LKALHHLDVPWLPSQIEQREGRIVRQGNQHDEVDIFAYATEGSLDATMWQNNERKARFIA AALSGDTSIRRLEDLGEGQANQFAMAKAIASGDQRLMQKAGLEADIARLERLRAAHLDDQ HAVRRQIRDAERYVESATRRIAEIGQDIERLVPTSGDAFSMTVMGKVYAERKEAGRALMK EILTQVQLQRQGEKVIASIGGFDLKYGGERFGRDGYRYTTMLMRTGADFEIDLAVTVTPL GAVSRLEHALGDFEGERERNRQRLADARRRLASYQSRDEGRDFAFAGELAEKLRQLAEVD AALATDVDERIAA